DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VLR
Uniprot ID:
O60729
Source protein:
Dual specificity protein phosphatase CDC14B
Source gene:
CDC14B
Class:
DEG_APCC_TPR_1
Location:
496:498
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9032
ASA_SCORE:
136.4333
COIL:
0.9433
CONS_SCORE:
0.2836
DSS_SCORE:
0.8864
HELIX:
0.036
FCONS_SCORE:
0.9202
RIG_SCORE:
0.79
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L488I
TCGA-AZ-4315
COAD
TCGA
VLR
DEG_APCC_TPR_1
0.1111
p.L488I
DO8842
COAD
ICGC
VLR
DEG_APCC_TPR_1
0.1111
p.R498H
TCGA-B7-A5TI
STAD
TCGA
VLR
DEG_APCC_TPR_1
0.8244
p.R498H
TCGA-BR-A453
STAD
TCGA
VLR
DEG_APCC_TPR_1
0.8244
p.R498H
SIDM01090
Colorectal Carcinoma
GDSC
VLR
DEG_APCC_TPR_1
0.8244
p.R498H
RKO
large_intestine
COSMIC
VLR
DEG_APCC_TPR_1
0.8244
p.L497F
TCGA-C5-A7CK
CESC
TCGA
VLR
DEG_APCC_TPR_1
0.6981
p.L497F
DO49000
CESC
ICGC
VLR
DEG_APCC_TPR_1
0.6981
p.R498C
TCGA-D9-A3Z3
SKCM
TCGA
VLR
DEG_APCC_TPR_1
0.8301
p.R498C
TCGA-ZF-AA4W
BLCA
TCGA
VLR
DEG_APCC_TPR_1
0.8301
p.R498C
DO219089
BLCA
ICGC
VLR
DEG_APCC_TPR_1
0.8301
p.R498C
DO233728
GACA
ICGC
VLR
DEG_APCC_TPR_1
0.8301
p.R498C
DO37563
SKCM
ICGC
VLR
DEG_APCC_TPR_1
0.8301
p.R498C
SIDM00145
T-Lymphoblastic Leukemia
GDSC
VLR
DEG_APCC_TPR_1
0.8301
p.R498C
ACH-001127
Leukemia
CCLE
VLR
DEG_APCC_TPR_1
0.8301
p.R498C
MOLT-4
haematopoietic_and_lymphoid_tissue
COSMIC
VLR
DEG_APCC_TPR_1
0.8301
p.L488F
TCGA-E6-A1LX
UCEC
TCGA
VLR
DEG_APCC_TPR_1
0.1111
p.L488F
TCGA-IB-7651
PAAD
TCGA
VLR
DEG_APCC_TPR_1
0.1111
p.L488F
DO46657
PAAD
ICGC
VLR
DEG_APCC_TPR_1
0.1111
p.L488F
DO41020
UCEC
ICGC
VLR
DEG_APCC_TPR_1
0.1111
p.I490F
TCGA-EB-A41A
SKCM
TCGA
VLR
DEG_APCC_TPR_1
0.1667
p.I490F
DO37429
SKCM
ICGC
VLR
DEG_APCC_TPR_1
0.1667
p.S489C
TCGA-JX-A3Q0
CESC
TCGA
VLR
DEG_APCC_TPR_1
0.1389
p.S489C
DO51607
CESC
ICGC
VLR
DEG_APCC_TPR_1
0.1389
p.S489C
DO11854
GBM
ICGC
VLR
DEG_APCC_TPR_1
0.1389
p.K494E
SIDM00202
Ewing's Sarcoma
GDSC
VLR
DEG_APCC_TPR_1
0.2778
p.K494E
EW-3
bone
COSMIC
VLR
DEG_APCC_TPR_1
0.2778
Drug responses associated with CDC14B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLR
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60729
Dual specificity protein phosphatase CDC14B
DEG_APCC_TPR_1
496:498
VLR
APC,CDC20,FZR1
0.9032
More...
Q14764
Major vault protein
DEG_APCC_TPR_1
891:893
VLR
APC,CDC20,FZR1
0.5797
More...