DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VPVHLD
Uniprot ID:
P12724
Source protein:
Eosinophil cationic protein
Source gene:
RNASE3
Class:
LIG_APCC_ABBA_1
Location:
152:157
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9805
ASA_SCORE:
38.4167
COIL:
0.7092
CONS_SCORE:
0.9475
DSS_SCORE:
0.6159
HELIX:
0.0485
FCONS_SCORE:
1.2367
RIG_SCORE:
0.8055
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R144L
TCGA-69-7979
LUAD
TCGA
VPVHLD
LIG_APCC_ABBA_1
0.1111
p.R144L
DO23874
LUAD
ICGC
VPVHLD
LIG_APCC_ABBA_1
0.1111
p.I160T
TCGA-96-7544
LUSC
TCGA
VPVHLD
LIG_APCC_ABBA_1
0.25
p.I160T
DO26425
LUSC
ICGC
VPVHLD
LIG_APCC_ABBA_1
0.25
p.I160T
SIDM00299
Other Sarcomas
GDSC
VPVHLD
LIG_APCC_ABBA_1
0.25
p.I160T
ACH-002271
Sarcoma
CCLE
VPVHLD
LIG_APCC_ABBA_1
0.25
p.I160T
MFH-ino
soft_tissue
COSMIC
VPVHLD
LIG_APCC_ABBA_1
0.25
p.S146Y
DO222884
COCA
ICGC
VPVHLD
LIG_APCC_ABBA_1
0.1667
p.P143S
DO222494
MELA
ICGC
VPVHLD
LIG_APCC_ABBA_1
0.0833
p.P150S
DO222595
MELA
ICGC
VPVHLD
LIG_APCC_ABBA_1
0.2778
Drug responses associated with RNASE3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPVHLD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P10153
Non-secretory ribonuclease
LIG_APCC_ABBA_1
153:158
VPVHLD
APC,CDC20,FZR1
0.9586
More...
P12724
Eosinophil cationic protein
LIG_APCC_ABBA_1
152:157
VPVHLD
APC,CDC20,FZR1
0.9805
More...