DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VQSTS
Uniprot ID:
Q9H9J4
Source protein:
Ubiquitin carboxyl-terminal hydrolase 42
Source gene:
USP42
Class:
DEG_SPOP_SBC_1
Location:
563:567
E3 ligase:
SPOP
DEGRON score:
0.8424
ASA_SCORE:
102.28
COIL:
0.9552
CONS_SCORE:
0.3006
DSS_SCORE:
0.5559
HELIX:
0.0366
FCONS_SCORE:
1.0442
RIG_SCORE:
0.6547
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T571S
TCGA-55-7907
LUAD
TCGA
VQSTS
DEG_SPOP_SBC_1
0.2222
p.T571S
DO25396
LUAD
ICGC
VQSTS
DEG_SPOP_SBC_1
0.2222
p.M572T
DO234383
ESAD
ICGC
VQSTS
DEG_SPOP_SBC_1
0.1944
p.V574F
DO228359
LICA
ICGC
VQSTS
DEG_SPOP_SBC_1
0.1389
p.Q564H
DO229028
LICA
ICGC
VQSTS
DEG_SPOP_SBC_1
0.647
p.I558V
SIDM01000
Melanoma
GDSC
VQSTS
DEG_SPOP_SBC_1
0.1944
p.I558V
ACH-000304
Skin Cancer
CCLE
VQSTS
DEG_SPOP_SBC_1
0.1944
p.I558V
WM-115
skin
COSMIC
VQSTS
DEG_SPOP_SBC_1
0.1944
Drug responses associated with USP42 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VQSTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q6XE24
RNA-binding motif, single-stranded-interacting protein 3
DEG_SPOP_SBC_1
297:301
VQSTS
SPOP
0.5818
More...
Q9H9J4
Ubiquitin carboxyl-terminal hydrolase 42
DEG_SPOP_SBC_1
563:567
VQSTS
SPOP
0.8424
More...