DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VTPAPS
Uniprot ID:
Q9P2R6
Source protein:
Arginine-glutamic acid dipeptide repeats protein
Source gene:
RERE
Class:
DEG_SCF_FBW7_1
Location:
747:752
E3 ligase:
FBXW7
DEGRON score:
0.9571
ASA_SCORE:
88
COIL:
0.9615
CONS_SCORE:
0.4828
DSS_SCORE:
0.8342
HELIX:
0.0145
FCONS_SCORE:
1.2345
RIG_SCORE:
0.5339
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G746V
TCGA-D3-A2JG
SKCM
TCGA
VTPAPS
DEG_SCF_FBW7_1
0.3056
p.G746V
DO47613
SKCM
ICGC
VTPAPS
DEG_SCF_FBW7_1
0.3056
p.A740S
TCGA-GN-A262
SKCM
TCGA
VTPAPS
DEG_SCF_FBW7_1
0.1389
p.A740S
DO37515
SKCM
ICGC
VTPAPS
DEG_SCF_FBW7_1
0.1389
p.G757E
TCGA-GN-A4U3
SKCM
TCGA
VTPAPS
DEG_SCF_FBW7_1
0.1944
p.G757E
DO219484
SKCM
ICGC
VTPAPS
DEG_SCF_FBW7_1
0.1944
p.P751S
DO222875
MELA
ICGC
VTPAPS
DEG_SCF_FBW7_1
0.5641
p.P744L
ACH-000985
Colon/Colorectal Cancer
CCLE
VTPAPS
DEG_SCF_FBW7_1
0.25
p.Q737H
ACH-000997
Colon/Colorectal Cancer
CCLE
VTPAPS
DEG_SCF_FBW7_1
0.0556
p.Q737H
ACH-001061
Colon/Colorectal Cancer
CCLE
VTPAPS
DEG_SCF_FBW7_1
0.0556
p.G757A
ACH-001795
Liposarcoma
CCLE
VTPAPS
DEG_SCF_FBW7_1
0.1944
p.R748Q
JM1
haematopoietic_and_lymphoid_tissue
COSMIC
VTPAPS
DEG_SCF_FBW7_1
0.7329
p.P743S
SNU-1040
large_intestine
COSMIC
VTPAPS
DEG_SCF_FBW7_1
0.2222
Drug responses associated with RERE mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VTPAPS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O14594
Neurocan core protein
DEG_SCF_FBW7_1
833:838
VTPAPS
FBXW7
0.9882
More...
Q9P2R6
Arginine-glutamic acid dipeptide repeats protein
DEG_SCF_FBW7_1
747:752
VTPAPS
FBXW7
0.9571
More...