Gene: JARID2

Basic information

Tag Content
Uniprot ID A0A452DTS6
Entrez ID 102184681
Genbank protein ID
Genbank nucleotide ID XM_018038767.1; XM_018038765.1;
Ensembl protein ID ENSCHIP00000003208; ENSCHIP00000003228; ENSCHIP00000003217;
Ensembl nucleotide ID ENSCHIG00000007119
Gene name Uncharacterized protein
Gene symbol JARID2
Organism Capra hircus
NCBI taxa ID 9925
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description
Sequence
MSKERPKRNI IQKKYDDSDG IPWSEERVVR KVLYLSLKEF KNAQKRQHGE GIPGSLKAVN 60
GLLGNGQSKG LGPASEQSEN EKDDASQVSS TSNDVSSSDF EEGPSRKRPR LQAQRKFAQS 120
QPNSPSTTPV KIVEPLLPPP ATQISDLSKR KPKTEDFLTF LCLRGSPALP NSMVYFGSSQ 180
DEEDVEEEDD ETEDVKAATN NASSSCQSTP RKGKTHKHVH NGHVFNGSSR SSREKEPVQK 240
HKSKEATPAK EKHSDARADT RREQASASHP PAAPPAGSSA KGLAAHHHHP PLHRSAQDLR 300
KQVSKVNGVT RMSSLGTSAT SAKKMREVRP SPSKTVKYTA TVTKGTVTYT KAKRELVKET 360
KPHHHKPSSA VTHTISGKTE SSNAKTRKQV LSLGGASRAT GPAVSGLKVS GRLNPKPCTK 420
EVGGRQLREG LRNSKRRLEE APPADKPQSP PKKMKGAAGS AAEGPGRKAA PGPAEKAPLG 480
GPGKKEAPER SLERNRPKRA AAGKGPPGRQ AHGKPDGGAP CENRSTSQSE PLPRPHEGAA 540
KAEKGAGRAG WAAMDEIPVL RPSAKEFHDP LVYIESVRPQ VEKYGMCRVV PPPDWRPECK 600
LNDEMRFVTQ IQHIHKLGRR WGPNVQRLAC IKKHLRSQGI AMDELPLIGG CELDLACFFR 660
LINEMGGMQQ VTDLKKWNKL ADMLRVPRTA QDRLAKLQEA YCQYLLSYDS LSPEEHRRLE 720
REVLMEKESL ERRKGPLEGH TEQDYHRFHP LPRFEPKNGL INGVAHRNGF RSKLKEVGPA 780
QLKTGRRRLF AQEKEVVKED EEDKGILSDF HKCIYKGRSV SLTTFYRTAR NIMNMCFSKE 840
PAPAEIEQEY WRLVEEKDCH VAVHCGKVDT NTHGSGFPVG KSEPFSRHGW NLTVLPNNTG 900
SILRHLGAVP GVTIPWLNIG MVFSTSCWSR DQNHLPYIDY LHTGADCIWY CIPAEEEHKL 960
EDVVHTLLQA NGTPGLQMLE SNVMISPEVL CREGIKVHRT VQQSGQFVVC FPGSFVSKVC 1020
CGYSVSETVH FATTQWTSMG FETAKEMKRR HIAKPFSMEK LLYQIAQAEA KKENGSTLST 1080
ISALLDELRD TELRQRRQLF EAGLHSSARY GSHDGSSAAP DGKKKPRKWL QLETSERRCQ 1140
VCQHLCYLSM VVQENENVVF CLECALRHVE KQKSCRGLKL MYRYDEEQII SLVNQICGKV 1200
SGKNGSIENC LSKPTPKRGP RKRATVDVPP SRLASS 1236

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologJARID2478729A0A5F4DE24Canis lupus familiarisPredictionMore>>
1:1 orthologJARID2102184681A0A452DTS6Capra hircusPredictionMore>>
1:1 orthologJARID23720Q92833CPO,CL/PHomo sapiensPublicationMore>>
1:1 orthologJarid2G3UZT8E14.5, E15.5Mus musculusPredictionMore>>
1:1 orthologJARID2462450A0A2I3SRS8Pan troglodytesPredictionMore>>
1:1 orthologJARID2A0A287AMW5Sus scrofaPredictionMore>>
1:1 orthologJarid2681740M0RBV7Rattus norvegicusPredictionMore>>

Gene ontology

GO ID GO Term
GO:0005634 nucleus
GO:0003677 DNA binding

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0539 Nucleus
KW-1185 Reference proteome
KW-0804 Transcription
KW-0805 Transcription regulation

Interpro

InterPro ID InterPro Term
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR003347 JmjC_dom
IPR003349 JmjN
IPR004198 Znf_C5HC2

PROSITE

PROSITE ID PROSITE Term
PS51011 ARID
PS51184 JMJC
PS51183 JMJN

Pfam

Pfam ID Pfam Term
PF01388 ARID
PF02373 JmjC
PF02375 JmjN
PF02928 zf-C5HC2