Gene:

Basic information

Tag Content
Uniprot ID A0A4X1UB00
Entrez ID
Genbank protein ID
Genbank nucleotide ID
Ensembl protein ID ENSSSCP00070027057
Ensembl nucleotide ID ENSSSCG00070016374
Gene name Uncharacterized protein
Gene symbol
Organism Sus scrofa
NCBI taxa ID 9823
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description
Sequence
MWGFAGGRLF GIFSAPVLVA VVCCAQSVND PGNMSFVKET VDKLLKGYDI RLRPDFGGPP 60
VCVGMNIDIA SIDMVSEVNM DYTLTMYFQQ YWRDKRLAYS GIPLNLTLDN RVADQLWVPD 120
TYFLNDKKSF VHGVTVKNRM IRLHPDGTVL YGLRITTTAA CMMDLRRYPL DEQNCTLEIE 180
SYGYTTDDIE FYWRGGDKAV TGVERIELPQ FSIVEHRLVS RNVVFATGAY PRLSLSFRLK 240
RNIGYFILQT YMPSILITIL SWVSFWINYD ASAARVALGI TTVLTMTTIN THLRETLPKI 300
PYVKAIDMYL MGCFVFVFLA LLEYAFVNYI FFGRGPQRQK KLAEKNAKAK NDRSKGDSNR 360
VDAHGNILLT SLEVHNEMNE VAGGVGDTRN SAISFDNSAI QYRKQSMPRE GRHMGARSIP 420
HKKTHLRRRS SQLKIKIPDL TDVNAIDRWS RIVFPFTFSL FNLVYWLYYV N 471

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologGABRB3A0A452FJH3Capra hircusPredictionMore>>
1:1 orthologGABRB32562P28472CL/PHomo sapiensPublicationMore>>
1:1 orthologGabrb314402P63080CPOMus musculusPublicationMore>>
1:1 orthologGABRB3453265A0A2I3THQ1Pan troglodytesPredictionMore>>
1:1 orthologA0A4X1UB00Sus scrofaPredictionMore>>
1:1 orthologGabrb3A0A0G2K0J9Rattus norvegicusPredictionMore>>

Gene ontology

GO ID GO Term
GO:0016021 integral component of membrane
GO:0005886 plasma membrane
GO:0005230 extracellular ligand-gated ion channel activity
GO:0004890 GABA-A receptor activity

Functional annotations

Keywords

Keyword ID Keyword Term
KW-1003 Cell membrane
KW-1015 Disulfide bond
KW-0407 Ion channel
KW-0406 Ion transport
KW-0472 Membrane
KW-0732 Signal
KW-0812 Transmembrane
KW-1133 Transmembrane helix
KW-0813 Transport

Interpro

InterPro ID InterPro Term
IPR006028 GABAA/Glycine_rcpt
IPR002289 GABAAb_rcpt
IPR006202 Neur_chan_lig-bd
IPR036734 Neur_chan_lig-bd_sf
IPR006201 Neur_channel
IPR036719 Neuro-gated_channel_TM_sf
IPR006029 Neurotrans-gated_channel_TM
IPR018000 Neurotransmitter_ion_chnl_CS

PROSITE

PROSITE ID PROSITE Term
PS00236 NEUROTR_ION_CHANNEL

Pfam

Pfam ID Pfam Term
PF02931 Neur_chan_LBD
PF02932 Neur_chan_memb