Gene Page: ARCN1

Summary
GeneID  372
Symbol  ARCN1
Synonyms  COPD
Description  archain 1
See related  HGNC:649|MIM:600820|Ensembl:ENSG00000095139|HPRD:02893|
Locus tag  -
Gene type  protein-coding
Map location  11q23.3
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.006 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
C20orf30.900.86
LDOC10.890.86
GORASP20.890.89
FAM50B0.890.88
MAEA0.890.86
FARSA0.890.86
WRNIP10.890.87
USP110.890.85
DHX300.890.87
PPP2R1A0.880.88
Top 10 negatively co-expressed genes
AF347015.21-0.77-0.76
MT-CO2-0.76-0.72
AF347015.8-0.74-0.71
AF347015.33-0.73-0.71
AF347015.31-0.73-0.71
NOSTRIN-0.72-0.70
MT-CYB-0.72-0.69
AF347015.2-0.71-0.67
AF347015.26-0.71-0.69
AF347015.27-0.70-0.71
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0016044membrane organizationEXP11031247 
GO:0006810transportIEA-
GO:0006886intracellular protein transportIEA-
GO:0006886intracellular protein transportTAS7782067 
GO:0006890retrograde vesicle-mediated transport, Golgi to EREXP11031247 
GO:0016192vesicle-mediated transportIEA-
GO:0048205COPI coating of Golgi vesicleEXP16956762 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0000139Golgi membraneIEA-
GO:0005794Golgi apparatusIEA-
GO:0005829cytosolEXP8533093 |8599108 
GO:0005737cytoplasmIEA-
GO:0016020membraneIEA-
GO:0031410cytoplasmic vesicleIEA-
GO:0030131clathrin adaptor complexIEA-
GO:0030126COPI vesicle coatISS-
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
COPAFLJ26320 | HEP-COPcoatomer protein complex, subunit alpha-HPRD8940050 
COPB1COPB | DKFZp761K102 | FLJ10341coatomer protein complex, subunit beta 1-HPRD,BioGRID8940050 
Beta-COP interacts with delta-COP. This interaction was modelled on a demonstrated interaction between rabbit beta-COP and rabbit delta-COP.BIND9482852 
COPG22-COP | DKFZp761N09121 | FLJ11781coatomer protein complex, subunit gamma 2-HPRD8940050 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
REACTOME_MEMBRANE_TRAFFICKING 12974All SZGR genes in this pathway
DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP 1382904All SZGR genes in this pathway
WANG_LMO4_TARGETS_DN 352225All SZGR genes in this pathway
MARKEY_RB1_ACUTE_LOF_DN 228137All SZGR genes in this pathway
LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN 800473All SZGR genes in this pathway
SCHLOSSER_SERUM_RESPONSE_DN 712443All SZGR genes in this pathway
MARTORIATI_MDM4_TARGETS_NEUROEPITHELIUM_DN 164111All SZGR genes in this pathway
MOHANKUMAR_TLX1_TARGETS_UP 414287All SZGR genes in this pathway
PUJANA_BRCA1_PCC_NETWORK 16521023All SZGR genes in this pathway
NUYTTEN_EZH2_TARGETS_DN 1024594All SZGR genes in this pathway
KENNY_CTNNB1_TARGETS_UP 5030All SZGR genes in this pathway
NING_CHRONIC_OBSTRUCTIVE_PULMONARY_DISEASE_UP 157105All SZGR genes in this pathway
IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR 532309All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_DN 1237837All SZGR genes in this pathway
RAMALHO_STEMNESS_UP 206118All SZGR genes in this pathway
KAYO_AGING_MUSCLE_UP 244165All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_INCIPIENT_DN 165106All SZGR genes in this pathway
KAYO_CALORIE_RESTRICTION_MUSCLE_UP 9564All SZGR genes in this pathway
MARSON_BOUND_BY_FOXP3_UNSTIMULATED 1229713All SZGR genes in this pathway
MARTINEZ_RB1_TARGETS_UP 673430All SZGR genes in this pathway
MARTINEZ_TP53_TARGETS_UP 602364All SZGR genes in this pathway
MARTINEZ_RB1_AND_TP53_TARGETS_UP 601369All SZGR genes in this pathway
SWEET_LUNG_CANCER_KRAS_UP 491316All SZGR genes in this pathway
ROME_INSULIN_TARGETS_IN_MUSCLE_UP 442263All SZGR genes in this pathway
YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_10 6938All SZGR genes in this pathway
KIM_ALL_DISORDERS_OLIGODENDROCYTE_NUMBER_CORR_UP 756494All SZGR genes in this pathway
CHYLA_CBFA2T3_TARGETS_DN 242146All SZGR genes in this pathway
IKEDA_MIR1_TARGETS_UP 5339All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-1/206215421611A,m8hsa-miR-1UGGAAUGUAAAGAAGUAUGUA
hsa-miR-206SZUGGAAUGUAAGGAAGUGUGUGG
hsa-miR-613AGGAAUGUUCCUUCUUUGCC
miR-125/351189819041Ahsa-miR-125bbrainUCCCUGAGACCCUAACUUGUGA
hsa-miR-125abrainUCCCUGAGACCCUUUAACCUGUG
miR-15/16/195/424/49711571163m8hsa-miR-15abrainUAGCAGCACAUAAUGGUUUGUG
hsa-miR-16brainUAGCAGCACGUAAAUAUUGGCG
hsa-miR-15bbrainUAGCAGCACAUCAUGGUUUACA
hsa-miR-195SZUAGCAGCACAGAAAUAUUGGC
hsa-miR-424CAGCAGCAAUUCAUGUUUUGAA
hsa-miR-497CAGCAGCACACUGUGGUUUGU
miR-1852662721Ahsa-miR-185brainUGGAGAGAAAGGCAGUUC
miR-204/2112092161A,m8hsa-miR-204brainUUCCCUUUGUCAUCCUAUGCCU
hsa-miR-211UUCCCUUUGUCAUCCUUCGCCU
miR-3702512581A,m8hsa-miR-370brainGCCUGCUGGGGUGGAACCUGG
miR-374220322091Ahsa-miR-374UUAUAAUACAACCUGAUAAGUG
miR-409-3p21532159m8hsa-miR-409-3pCGAAUGUUGCUCGGUGAACCCCU
miR-9185918651Ahsa-miR-9SZUCUUUGGUUAUCUAGCUGUAUGA
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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