Gene: LINC00430

106144533
-
long intergenic non-protein coding RNA 430
ncRNA
13q31.1
Ensembl:ENSG00000233528
NC_000013.11
SNP Mapped
4   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
NA (AD)  NA (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs9523884chr13:86932483 (GRCh38.p7)C>Aalcohol dependenceSNV(Single Nucleotide Variation)
rs9523867chr13:86927231 (GRCh38.p7)G>Aalcohol dependenceSNV(Single Nucleotide Variation)
rs9523810chr13:86914128 (GRCh38.p7)A>Calcohol dependenceSNV(Single Nucleotide Variation)
rs9523806chr13:86909774 (GRCh38.p7)A>Galcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
C11orf440.96
OR4C460.958
OR5F10.958
TSPY30.958
OR5M10.958
OR5T20.958
OR4C120.958
KRTAP27-10.958
OR5W20.958
MAGEB50.958

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
HHATL-0.298
SLC1A4-0.287
FUT9-0.28
NTSR2-0.274
ADCY2-0.266
SORCS2-0.265
GABRG1-0.262
PLA2G6-0.26
CADM1-0.257
PEX11A-0.256

Drugs/Compounds

    There is no DrugBank record for this gene !

    There is no CTD record for this GENE !

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal