DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
DKENQ
Uniprot ID:
P67809
Source protein:
Y-box-binding protein 1
Source gene:
YBX1
Class:
DEG_APCC_KENBOX_2
Location:
263:267
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5688
ASA_SCORE:
109.8
COIL:
0.7672
CONS_SCORE:
0.301
DSS_SCORE:
0.8996
HELIX:
0.2196
FCONS_SCORE:
0.8862
RIG_SCORE:
0.5647
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N266S
TCGA-A2-A1G4
BRCA
TCGA
DKENQ
DEG_APCC_KENBOX_2
0.7069
p.N266S
DO1259
BRCA
ICGC
DKENQ
DEG_APCC_KENBOX_2
0.7069
p.R253T
TCGA-A5-A0VP
UCEC
TCGA
DKENQ
DEG_APCC_KENBOX_2
0.0556
p.R253T
DO42600
UCEC
ICGC
DKENQ
DEG_APCC_KENBOX_2
0.0556
p.Q274P
TCGA-BR-8081
STAD
TCGA
DKENQ
DEG_APCC_KENBOX_2
0.1389
p.Q274P
DO38795
STAD
ICGC
DKENQ
DEG_APCC_KENBOX_2
0.1389
p.R256T
TCGA-D1-A1NZ
UCEC
TCGA
DKENQ
DEG_APCC_KENBOX_2
0.1389
p.R256T
DO41536
UCEC
ICGC
DKENQ
DEG_APCC_KENBOX_2
0.1389
p.E257K
TCGA-EO-A22U
UCEC
TCGA
DKENQ
DEG_APCC_KENBOX_2
0.1667
p.E257K
DO43755
UCEC
ICGC
DKENQ
DEG_APCC_KENBOX_2
0.1667
p.Q267H
SIDM00789
Colorectal Carcinoma
GDSC
DKENQ
DEG_APCC_KENBOX_2
0.647
p.Q267H
HCT-15
large_intestine
COSMIC
DKENQ
DEG_APCC_KENBOX_2
0.647
p.G268R
SIDM00946
T-Lymphoblastic Leukemia
GDSC
DKENQ
DEG_APCC_KENBOX_2
0.3056
p.G268R
Daudi
haematopoietic_and_lymphoid_tissue
COSMIC
DKENQ
DEG_APCC_KENBOX_2
0.3056
p.G259D
SIDM00217
Colorectal Carcinoma
GDSC
DKENQ
DEG_APCC_KENBOX_2
0.2222
p.G259D
ACH-000999
Colon/Colorectal Cancer
CCLE
DKENQ
DEG_APCC_KENBOX_2
0.2222
p.G259D
SNU-1040
large_intestine
COSMIC
DKENQ
DEG_APCC_KENBOX_2
0.2222
Drug responses associated with YBX1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DKENQ
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P67809
Y-box-binding protein 1
DEG_APCC_KENBOX_2
263:267
DKENQ
APC,CDC20,FZR1
0.5688
More...
A6NJB7
Proline-rich protein 19
DEG_APCC_KENBOX_2
122:126
DKENQ
APC,CDC20,FZR1
0.964
More...
Q99618
Cell division cycle-associated protein 3
DEG_APCC_KENBOX_2
257:261
DKENQ
APC,CDC20,FZR1
0.9977
More...