DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
ERRELGFVQ
Uniprot ID:
A6NDN3
Source protein:
Golgin subfamily A member 6B
Source gene:
GOLGA6B
Class:
DEG_APCC_DBOX_1
Location:
549:557
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.732
ASA_SCORE:
111.6
COIL:
0.3766
CONS_SCORE:
0.5899
DSS_SCORE:
0.6065
HELIX:
0.6188
FCONS_SCORE:
1.0546
RIG_SCORE:
0.7649
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V556F
TCGA-21-1082
LUSC
TCGA
ERRELGFVQ
DEG_APCC_DBOX_1
0.7068
p.V556F
DO26463
LUSC
ICGC
ERRELGFVQ
DEG_APCC_DBOX_1
0.7068
p.V548M
TCGA-AA-A010
COAD
TCGA
ERRELGFVQ
DEG_APCC_DBOX_1
0.3056
p.G560E
TCGA-D3-A8GL
SKCM
TCGA
ERRELGFVQ
DEG_APCC_DBOX_1
0.25
p.G560E
DO50287
SKCM
ICGC
ERRELGFVQ
DEG_APCC_DBOX_1
0.25
p.G564S
TCGA-EB-A431
SKCM
TCGA
ERRELGFVQ
DEG_APCC_DBOX_1
0.1389
p.G564S
DO37671
SKCM
ICGC
ERRELGFVQ
DEG_APCC_DBOX_1
0.1389
Drug responses associated with GOLGA6B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of ERRELGFVQ
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NYA3
Golgin subfamily A member 6A
DEG_APCC_DBOX_1
549:557
ERRELGFVQ
APC,CDC20,FZR1
0.8992
More...
A6NDN3
Golgin subfamily A member 6B
DEG_APCC_DBOX_1
549:557
ERRELGFVQ
APC,CDC20,FZR1
0.732
More...
A6NDK9
Golgin subfamily A member 6C
DEG_APCC_DBOX_1
549:557
ERRELGFVQ
APC,CDC20,FZR1
0.7385
More...
P0CG33
Golgin subfamily A member 6D
DEG_APCC_DBOX_1
549:557
ERRELGFVQ
APC,CDC20,FZR1
0.8495
More...