DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
ERRELGFVQ
Uniprot ID:
P0CG33
Source protein:
Golgin subfamily A member 6D
Source gene:
GOLGA6D
Class:
DEG_APCC_DBOX_1
Location:
549:557
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8495
ASA_SCORE:
109.4444
COIL:
0.5038
CONS_SCORE:
0.6096
DSS_SCORE:
0.6065
HELIX:
0.4841
FCONS_SCORE:
0.9967
RIG_SCORE:
0.7649
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R566K
TCGA-06-5416
GBM
TCGA
ERRELGFVQ
DEG_APCC_DBOX_1
0.0833
p.R566K
DO10880
GBM
ICGC
ERRELGFVQ
DEG_APCC_DBOX_1
0.0833
p.E540K
TCGA-91-6831
LUAD
TCGA
ERRELGFVQ
DEG_APCC_DBOX_1
0.0833
p.E540K
DO23753
LUAD
ICGC
ERRELGFVQ
DEG_APCC_DBOX_1
0.0833
p.G544R
TCGA-FW-A3R5
SKCM
TCGA
ERRELGFVQ
DEG_APCC_DBOX_1
0.1944
p.G544R
DO37406
SKCM
ICGC
ERRELGFVQ
DEG_APCC_DBOX_1
0.1944
p.V556I
TCGA-LN-A8HZ
ESCA
TCGA
ERRELGFVQ
DEG_APCC_DBOX_1
0.5965
p.G564S
TCGA-VQ-A8P2
STAD
TCGA
ERRELGFVQ
DEG_APCC_DBOX_1
0.1389
p.G564S
DO51761
STAD
ICGC
ERRELGFVQ
DEG_APCC_DBOX_1
0.1389
Drug responses associated with GOLGA6D mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of ERRELGFVQ
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NYA3
Golgin subfamily A member 6A
DEG_APCC_DBOX_1
549:557
ERRELGFVQ
APC,CDC20,FZR1
0.8992
More...
A6NDN3
Golgin subfamily A member 6B
DEG_APCC_DBOX_1
549:557
ERRELGFVQ
APC,CDC20,FZR1
0.732
More...
A6NDK9
Golgin subfamily A member 6C
DEG_APCC_DBOX_1
549:557
ERRELGFVQ
APC,CDC20,FZR1
0.7385
More...
P0CG33
Golgin subfamily A member 6D
DEG_APCC_DBOX_1
549:557
ERRELGFVQ
APC,CDC20,FZR1
0.8495
More...