DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LAPEPEETWVVEM
Uniprot ID:
A6NHP3
Source protein:
Speedy protein E2B
Source gene:
SPDYE2B
Class:
DEG_ODPH_VHL_1
Location:
86:98
E3 ligase:
VHL
DEGRON score:
0.9787
ASA_SCORE:
77.6615
COIL:
0.6176
CONS_SCORE:
0.6121
DSS_SCORE:
0.4331
HELIX:
0.2244
FCONS_SCORE:
1.4115
RIG_SCORE:
0.7882
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A87V
DO229213
THCA
ICGC
LAPEPEETWVVEM
DEG_ODPH_VHL_1
0.6936
p.D78E
DBTRG-05MG
central_nervous_system
COSMIC
LAPEPEETWVVEM
DEG_ODPH_VHL_1
0.1111
p.D78E
A431
skin
COSMIC
LAPEPEETWVVEM
DEG_ODPH_VHL_1
0.1111
p.D78E
RXF393
kidney
COSMIC
LAPEPEETWVVEM
DEG_ODPH_VHL_1
0.1111
p.D78E
DG-75
haematopoietic_and_lymphoid_tissue
COSMIC
LAPEPEETWVVEM
DEG_ODPH_VHL_1
0.1111
p.D78E
NAMALWA
haematopoietic_and_lymphoid_tissue
COSMIC
LAPEPEETWVVEM
DEG_ODPH_VHL_1
0.1111
Drug responses associated with SPDYE2B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LAPEPEETWVVEM
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6NHP3
Speedy protein E2B
DEG_ODPH_VHL_1
86:98
LAPEPEETWVVEM
VHL
0.9787
More...
A6NIY4
Speedy protein E5
DEG_ODPH_VHL_1
86:98
LAPEPEETWVVEM
VHL
0.9466
More...
P0CI01
Speedy protein E6
DEG_ODPH_VHL_1
86:98
LAPEPEETWVVEM
VHL
0.9765
More...
Q495Y8
Speedy protein E2
DEG_ODPH_VHL_1
86:98
LAPEPEETWVVEM
VHL
0.9791
More...
A6NJR5
Putative speedy protein-like protein 3
DEG_ODPH_VHL_1
46:58
LAPEPEETWVVEM
VHL
0.8647
More...