DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LGPFSD
Uniprot ID:
Q13950
Source protein:
Runt-related transcription factor 2
Source gene:
RUNX2
Class:
LIG_APCC_ABBA_1
Location:
367:372
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9066
ASA_SCORE:
65.5833
COIL:
0.8845
CONS_SCORE:
0.3007
DSS_SCORE:
0.5454
HELIX:
0.0635
FCONS_SCORE:
1.0649
RIG_SCORE:
0.6527
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P373R
TCGA-AR-A24Q
BRCA
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.3056
p.D372V
TCGA-VR-A8ER
ESCA
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.7785
p.S380F
DO6308
CESC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.1111
p.P372R
DO52438
COCA
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.7512
p.R357M
DO228948
LICA
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.0556
p.W365L
DO228971
LICA
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.2778
p.W365L
DO229027
LICA
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.2778
p.W365C
DO229027
LICA
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.2778
p.S361P
DO50857
LIRI
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.1667
p.Q377E
DO23742
LUAD
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.1944
p.P364S
DO51783
STAD
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.25
p.T379M
DO51761
STAD
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.1389
p.M378T
DO42023
UCEC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.6111
p.G363A
SIDM00718
Non-Small Cell Lung Carcinoma
GDSC
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.G363A
NCI-H358
lung
COSMIC
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.H371R
IPC-298
skin
COSMIC
LGPFSD
LIG_APCC_ABBA_1
0.8244
p.H379R
IPC-298
skin
COSMIC
LGPFSD
LIG_APCC_ABBA_1
0.1389
p.H357R
IPC-298
skin
COSMIC
LGPFSD
LIG_APCC_ABBA_1
0.0556
Drug responses associated with RUNX2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LGPFSD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P07333
Macrophage colony-stimulating factor 1 receptor
LIG_APCC_ABBA_1
339:344
LGPFSD
APC,CDC20,FZR1
0.926
More...
Q13950
Runt-related transcription factor 2
LIG_APCC_ABBA_1
367:372
LGPFSD
APC,CDC20,FZR1
0.9066
More...
Q9ULB5
Cadherin-7
LIG_APCC_ABBA_1
355:360
LGPFSD
APC,CDC20,FZR1
0.9255
More...