DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
LGPFSD
Uniprot ID:
Q9ULB5
Source protein:
Cadherin-7
Source gene:
CDH7
Class:
LIG_APCC_ABBA_1
Location:
355:360
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9255
ASA_SCORE:
58.65
COIL:
0.7652
CONS_SCORE:
0.746
DSS_SCORE:
0.2782
HELIX:
0.0282
FCONS_SCORE:
1.0788
RIG_SCORE:
0.717
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P357L
TCGA-30-1857
OV
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.6471
p.P357L
DO28491
OV
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.6471
p.D349Y
TCGA-63-A5MV
LUSC
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.1667
p.D349Y
DO219167
LUSC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.1667
p.R351H
TCGA-85-7698
LUSC
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.R351H
TCGA-YZ-A985
UVM
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.R351H
DO27723
LUSC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.R351H
DO232761
PBCA
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.R351H
SIDM00721
Small Cell Lung Carcinoma
GDSC
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.R351H
ACH-002171
Lung Cancer
CCLE
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.R351H
NCI-H250
lung
COSMIC
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.V364M
TCGA-AP-A051
UCEC
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.V364M
DO42673
UCEC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.T363S
TCGA-BK-A139
UCEC
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.25
p.T363S
DO41716
UCEC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.25
p.D370Y
TCGA-BR-8080
STAD
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.0556
p.D370Y
DO38651
STAD
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.0556
p.P357S
TCGA-DF-A2KU
UCEC
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.6752
p.P357S
TCGA-FS-A4FD
SKCM
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.6752
p.P357S
TCGA-WE-AAA0
SKCM
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.6752
p.P357S
DO37699
SKCM
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.6752
p.P357S
DO51294
SKCM
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.6752
p.P357S
DO223286
UCEC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.6752
p.P357S
ACH-002055
Lymphoma
CCLE
LGPFSD
LIG_APCC_ABBA_1
0.6752
p.D347Y
TCGA-EY-A1G8
UCEC
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.1111
p.D347Y
DO43578
UCEC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.1111
p.D349N
TCGA-EY-A1GK
UCEC
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.1667
p.D349N
DO42985
UCEC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.1667
p.A348V
TCGA-QF-A5YS
UCEC
TCGA
LGPFSD
LIG_APCC_ABBA_1
0.1389
p.A348V
DO52426
UCEC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.1389
p.D349H
DO233622
GACA
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.1667
p.D349V
DO233865
GACA
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.1667
p.A348S
DO228924
LICA
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.1389
p.S354I
DO229045
LICA
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.3056
p.S354I
DO230918
LUSC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.3056
p.S354I
DO224546
LUSC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.3056
p.G356V
DO229006
LICA
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.6421
p.R351G
DO231824
LINC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.2222
p.F352I
DO45047
LINC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.25
p.L355F
DO230918
LUSC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.587
p.L355F
DO224546
LUSC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.587
p.D360E
DO231091
LUSC
ICGC
LGPFSD
LIG_APCC_ABBA_1
0.5647
p.T362R
SIDM01186
Breast Carcinoma
GDSC
LGPFSD
LIG_APCC_ABBA_1
0.2778
p.T362R
ACH-000554
Breast Cancer
CCLE
LGPFSD
LIG_APCC_ABBA_1
0.2778
p.T362R
UACC-893
breast
COSMIC
LGPFSD
LIG_APCC_ABBA_1
0.2778
Drug responses associated with CDH7 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LGPFSD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P07333
Macrophage colony-stimulating factor 1 receptor
LIG_APCC_ABBA_1
339:344
LGPFSD
APC,CDC20,FZR1
0.926
More...
Q13950
Runt-related transcription factor 2
LIG_APCC_ABBA_1
367:372
LGPFSD
APC,CDC20,FZR1
0.9066
More...
Q9ULB5
Cadherin-7
LIG_APCC_ABBA_1
355:360
LGPFSD
APC,CDC20,FZR1
0.9255
More...