DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
LLLFKD
Uniprot ID:
Q9Y3C4
Source protein:
EKC/KEOPS complex subunit TPRKB
Source gene:
TPRKB
Class:
LIG_APCC_ABBA_1
Location:
17:22
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6529
ASA_SCORE:
29.75
COIL:
0.285
CONS_SCORE:
0.6398
DSS_SCORE:
0.0623
HELIX:
0.0052
FCONS_SCORE:
1.3177
RIG_SCORE:
0.9375
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R14M
TCGA-HR-A2OG
SKCM
TCGA
LLLFKD
LIG_APCC_ABBA_1
0.25
p.R14M
DO37511
SKCM
ICGC
LLLFKD
LIG_APCC_ABBA_1
0.25
p.L9I
TCGA-VQ-A924
STAD
TCGA
LLLFKD
LIG_APCC_ABBA_1
0.1111
p.L9I
DO229026
LICA
ICGC
LLLFKD
LIG_APCC_ABBA_1
0.1111
p.L9I
DO51795
STAD
ICGC
LLLFKD
LIG_APCC_ABBA_1
0.1111
p.L9P
DO48410
BLCA
ICGC
LLLFKD
LIG_APCC_ABBA_1
0.1111
p.E12K
SIDM00358
Gastric Carcinoma
GDSC
LLLFKD
LIG_APCC_ABBA_1
0.1944
p.E12K
ACH-000144
Gastric Cancer
CCLE
LLLFKD
LIG_APCC_ABBA_1
0.1944
p.E12K
RERF-GC-1B
stomach
COSMIC
LLLFKD
LIG_APCC_ABBA_1
0.1944
Drug responses associated with TPRKB mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LLLFKD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96JH8
Ras-associating and dilute domain-containing protein
LIG_APCC_ABBA_1
352:357
LLLFKD
APC,CDC20,FZR1
0.7772
More...
Q9HAW4
Claspin
LIG_APCC_ABBA_1
725:730
LLLFKD
APC,CDC20,FZR1
0.9862
More...
Q9Y3C4
EKC/KEOPS complex subunit TPRKB
LIG_APCC_ABBA_1
17:22
LLLFKD
APC,CDC20,FZR1
0.6529
More...