DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
LSPFSE
Uniprot ID:
Q70EL1
Source protein:
Inactive ubiquitin carboxyl-terminal hydrolase 54
Source gene:
USP54
Class:
LIG_APCC_ABBA_1
Location:
602:607
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9347
ASA_SCORE:
84.1333
COIL:
0.8362
CONS_SCORE:
0.4128
DSS_SCORE:
0.4939
HELIX:
0.1315
FCONS_SCORE:
0.8596
RIG_SCORE:
0.6991
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R594S
TCGA-77-8136
LUSC
TCGA
LSPFSE
LIG_APCC_ABBA_1
0.1111
p.R600M
DO223732
CESC
ICGC
LSPFSE
LIG_APCC_ABBA_1
0.2778
p.A599D
DO229025
LICA
ICGC
LSPFSE
LIG_APCC_ABBA_1
0.25
p.Q605H
DO42280
UCEC
ICGC
LSPFSE
LIG_APCC_ABBA_1
0.7582
p.R608Q
DO41331
UCEC
ICGC
LSPFSE
LIG_APCC_ABBA_1
0.3056
p.L602V
SIDM01062
Breast Carcinoma
GDSC
LSPFSE
LIG_APCC_ABBA_1
0.5654
p.L602V
ACH-000643
Breast Cancer
CCLE
LSPFSE
LIG_APCC_ABBA_1
0.5654
p.L602V
HDQ-P1
breast
COSMIC
LSPFSE
LIG_APCC_ABBA_1
0.5654
p.D592E
ACH-001201
Brain Cancer
CCLE
LSPFSE
LIG_APCC_ABBA_1
0.0556
Drug responses associated with USP54 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LSPFSE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P10586
Receptor-type tyrosine-protein phosphatase F
LIG_APCC_ABBA_1
379:384
LSPFSE
APC,CDC20,FZR1
0.783
More...
Q70EL1
Inactive ubiquitin carboxyl-terminal hydrolase 54
LIG_APCC_ABBA_1
602:607
LSPFSE
APC,CDC20,FZR1
0.9347
More...
Q2NL68
Proline and serine-rich protein 3
LIG_APCC_ABBA_1
236:241
LSPFSE
APC,CDC20,FZR1
0.9736
More...