DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
LTPLSS
Uniprot ID:
Q6ZP01
Source protein:
RNA-binding protein 44
Source gene:
RBM44
Class:
DEG_SCF_FBW7_1
Location:
127:132
E3 ligase:
FBXW7
DEGRON score:
0.87
ASA_SCORE:
57.7167
COIL:
0.7133
CONS_SCORE:
0.5343
DSS_SCORE:
0.4196
HELIX:
0.1368
FCONS_SCORE:
0.8999
RIG_SCORE:
0.6928
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E142K
TCGA-55-7281
LUAD
TCGA
LTPLSS
DEG_SCF_FBW7_1
0.0556
p.E142K
DO25985
LUAD
ICGC
LTPLSS
DEG_SCF_FBW7_1
0.0556
p.V138A
TCGA-E7-A85H
BLCA
TCGA
LTPLSS
DEG_SCF_FBW7_1
0.1667
p.V138A
DO219018
BLCA
ICGC
LTPLSS
DEG_SCF_FBW7_1
0.1667
p.K123N
DO36556
READ
ICGC
LTPLSS
DEG_SCF_FBW7_1
0.3333
p.D135N
SIDM00438
B-Lymphoblastic Leukemia
GDSC
LTPLSS
DEG_SCF_FBW7_1
0.25
p.P129L
SIDM01025
Esophageal Squamous Cell Carcinoma
GDSC
LTPLSS
DEG_SCF_FBW7_1
0.7582
p.P129L
ACH-000637
Esophageal Cancer
CCLE
LTPLSS
DEG_SCF_FBW7_1
0.7582
p.P129L
KYSE-520
oesophagus
COSMIC
LTPLSS
DEG_SCF_FBW7_1
0.7582
p.S126C
SIDM00118
Colorectal Carcinoma
GDSC
LTPLSS
DEG_SCF_FBW7_1
0.3056
p.S126C
ACH-001081
Colon/Colorectal Cancer
CCLE
LTPLSS
DEG_SCF_FBW7_1
0.3056
p.S126C
HCC2998
large_intestine
COSMIC
LTPLSS
DEG_SCF_FBW7_1
0.3056
Drug responses associated with RBM44 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of LTPLSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UPX0
Protein turtle homolog B
DEG_SCF_FBW7_1
912:917
LTPLSS
FBXW7
0.9978
More...
Q9H2A3
Neurogenin-2
DEG_SCF_FBW7_1
30:35
LTPLSS
FBXW7
0.977
More...
Q6ZP01
RNA-binding protein 44
DEG_SCF_FBW7_1
127:132
LTPLSS
FBXW7
0.87
More...