DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PTPVPT
Uniprot ID:
O15078
Source protein:
Centrosomal protein of 290 kDa
Source gene:
CEP290
Class:
DEG_SCF_FBW7_1
Location:
1611:1616
E3 ligase:
FBXW7
DEGRON score:
0.9178
ASA_SCORE:
95.9
COIL:
0.8327
CONS_SCORE:
0.5953
DSS_SCORE:
0.3964
HELIX:
0.1563
FCONS_SCORE:
0.8855
RIG_SCORE:
0.6696
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R1622C
TCGA-A5-A0G2
UCEC
TCGA
PTPVPT
DEG_SCF_FBW7_1
0.1667
p.R1622C
TCGA-EO-A22X
UCEC
TCGA
PTPVPT
DEG_SCF_FBW7_1
0.1667
p.R1624C
DO52706
CLLE
ICGC
PTPVPT
DEG_SCF_FBW7_1
0.1111
p.R1624C
DO43907
UCEC
ICGC
PTPVPT
DEG_SCF_FBW7_1
0.1111
p.R1624C
DO41235
UCEC
ICGC
PTPVPT
DEG_SCF_FBW7_1
0.1111
p.T1618I
DO229470
SKCA
ICGC
PTPVPT
DEG_SCF_FBW7_1
0.7222
p.V1614F
ACH-000944
Lymphoma
CCLE
PTPVPT
DEG_SCF_FBW7_1
0.5957
Drug responses associated with CEP290 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PTPVPT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15078
Centrosomal protein of 290 kDa
DEG_SCF_FBW7_1
1611:1616
PTPVPT
FBXW7
0.9178
More...
P59797
Selenoprotein V
DEG_SCF_FBW7_1
106:111
PTPVPT
FBXW7
0.9907
More...
H7BZ55
Ciliary rootlet coiled-coil protein 2
DEG_SCF_FBW7_1
55:60
PTPVPT
FBXW7
0.96
More...