DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PVTPEPT
Uniprot ID:
Q14676
Source protein:
Mediator of DNA damage checkpoint protein 1
Source gene:
MDC1
Class:
DEG_SCF_FBW7_1
Location:
1382:1388
E3 ligase:
FBXW7
DEGRON score:
0.991
ASA_SCORE:
98.0429
COIL:
0.962
CONS_SCORE:
0.2827
DSS_SCORE:
0.8189
HELIX:
0.0124
FCONS_SCORE:
1.0008
RIG_SCORE:
0.6117
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1389Y
TCGA-AX-A0J0
UCEC
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.3056
p.S1389Y
TCGA-EO-A22R
UCEC
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.3056
p.R1390W
TCGA-CM-5348
COAD
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.2778
p.N1397H
TCGA-D1-A16Y
UCEC
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.0833
p.R1395I
TCGA-F5-6814
READ
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.1389
p.N1397I
TCGA-F7-A61S
HNSC
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.0833
p.R1390Q
TCGA-VQ-A91E
STAD
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.2778
p.R1390Q
ACH-000897
Thyroid Cancer
CCLE
PVTPEPT
DEG_SCF_FBW7_1
0.2778
p.R1390Q
ACH-000903
Thyroid Cancer
CCLE
PVTPEPT
DEG_SCF_FBW7_1
0.2778
p.R1390Q
ACH-001390
Breast Cancer
CCLE
PVTPEPT
DEG_SCF_FBW7_1
0.2778
p.R1390Q
FTC-133
thyroid
COSMIC
PVTPEPT
DEG_SCF_FBW7_1
0.2778
p.L1396F
DO2198
BRCA
ICGC
PVTPEPT
DEG_SCF_FBW7_1
0.2222
p.S1394F
DO49976
CESC
ICGC
PVTPEPT
DEG_SCF_FBW7_1
0.1667
p.S1382F
DO47268
SKCM
ICGC
PVTPEPT
DEG_SCF_FBW7_1
0.7982
p.R1380M
DO51761
STAD
ICGC
PVTPEPT
DEG_SCF_FBW7_1
0.2778
p.E1380K
ACH-002019
Cervical Cancer
CCLE
PVTPEPT
DEG_SCF_FBW7_1
0.2778
Drug responses associated with MDC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVTPEPT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1382:1388
PVTPEPT
FBXW7
0.991
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1423:1429
PVTPEPT
FBXW7
0.9545
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1464:1470
PVTPEPT
FBXW7
0.9908
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1546:1552
PVTPEPT
FBXW7
0.9979
More...