DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
PVTPEPT
Uniprot ID:
Q14676
Source protein:
Mediator of DNA damage checkpoint protein 1
Source gene:
MDC1
Class:
DEG_SCF_FBW7_1
Location:
1423:1429
E3 ligase:
FBXW7
DEGRON score:
0.9545
ASA_SCORE:
98.7286
COIL:
0.9619
CONS_SCORE:
0.329
DSS_SCORE:
0.8169
HELIX:
0.0127
FCONS_SCORE:
0.9266
RIG_SCORE:
0.6264
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T1433P
TCGA-06-1805
GBM
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.2222
p.S1430C
TCGA-55-8205
LUAD
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.75
p.E1415K
TCGA-AG-A002
READ
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.1111
p.G1435D
TCGA-EO-A3AV
UCEC
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.1667
p.P1426H
TCGA-G4-6628
COAD
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.7694
p.T1425A
TCGA-WE-A8ZM
SKCM
TCGA
PVTPEPT
DEG_SCF_FBW7_1
0.825
p.E1435A
DO22237
LGG
ICGC
PVTPEPT
DEG_SCF_FBW7_1
0.1667
p.Q1413E
DO51195
LUAD
ICGC
PVTPEPT
DEG_SCF_FBW7_1
0.1667
p.E1435Q
DO26593
LUSC
ICGC
PVTPEPT
DEG_SCF_FBW7_1
0.1667
p.P1439S
DO47368
SKCM
ICGC
PVTPEPT
DEG_SCF_FBW7_1
0.0556
p.S1422Y
DO41488
UCEC
ICGC
PVTPEPT
DEG_SCF_FBW7_1
0.3056
p.P1426S
SIDM01768
Melanoma
GDSC
PVTPEPT
DEG_SCF_FBW7_1
0.6752
p.P1426S
ACH-000899
Skin Cancer
CCLE
PVTPEPT
DEG_SCF_FBW7_1
0.6752
Drug responses associated with MDC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of PVTPEPT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1382:1388
PVTPEPT
FBXW7
0.991
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1423:1429
PVTPEPT
FBXW7
0.9545
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1464:1470
PVTPEPT
FBXW7
0.9908
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_SCF_FBW7_1
1546:1552
PVTPEPT
FBXW7
0.9979
More...