DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
TPEPVVPTA
Uniprot ID:
Q14676
Source protein:
Mediator of DNA damage checkpoint protein 1
Source gene:
MDC1
Class:
DEG_COP1_1
Location:
1608:1616
E3 ligase:
COP1
DEGRON score:
0.9974
ASA_SCORE:
101.2
COIL:
0.9723
CONS_SCORE:
0.3496
DSS_SCORE:
0.7366
HELIX:
0.009
FCONS_SCORE:
1.178
RIG_SCORE:
0.6041
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.S1605C
TCGA-BT-A3PH
BLCA
TCGA
TPEPVVPTA
DEG_COP1_1
0.6944
p.R1603W
TCGA-DD-AAE2
LIHC
TCGA
TPEPVVPTA
DEG_COP1_1
0.1944
p.V1606F
TCGA-KN-8424
KICH
TCGA
TPEPVVPTA
DEG_COP1_1
0.2778
p.P1617H
SIDM01263
T-Lymphoblastic Leukemia
GDSC
TPEPVVPTA
DEG_COP1_1
0.3056
p.T1615I
SIDM00859
B-Cell Non-Hodgkin's Lymphoma
GDSC
TPEPVVPTA
DEG_COP1_1
0.7078
p.T1615I
ACH-001498
Lymphoma
CCLE
TPEPVVPTA
DEG_COP1_1
0.7078
p.T1615I
Farage
haematopoietic_and_lymphoid_tissue
COSMIC
TPEPVVPTA
DEG_COP1_1
0.7078
p.E1618K
ACH-002019
Cervical Cancer
CCLE
TPEPVVPTA
DEG_COP1_1
0.2778
Drug responses associated with MDC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of TPEPVVPTA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_COP1_1
1157:1165
TPEPVVPTA
COP1
0.9753
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_COP1_1
1239:1247
TPEPVVPTA
COP1
0.9272
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_COP1_1
1280:1288
TPEPVVPTA
COP1
0.9928
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_COP1_1
1608:1616
TPEPVVPTA
COP1
0.9974
More...