DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
TPETVVPTA
Uniprot ID:
Q14676
Source protein:
Mediator of DNA damage checkpoint protein 1
Source gene:
MDC1
Class:
DEG_COP1_1
Location:
1198:1206
E3 ligase:
COP1
DEGRON score:
0.9906
ASA_SCORE:
95.7222
COIL:
0.9389
CONS_SCORE:
0.2496
DSS_SCORE:
0.6448
HELIX:
0.0231
FCONS_SCORE:
1.105
RIG_SCORE:
0.7202
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G1189V
TCGA-44-7662
LUAD
TCGA
TPETVVPTA
DEG_COP1_1
0.0833
p.S1194C
TCGA-44-7670
LUAD
TCGA
TPETVVPTA
DEG_COP1_1
0.2222
p.S1194C
DO506
BLCA
ICGC
TPETVVPTA
DEG_COP1_1
0.2222
p.E1208K
TCGA-DU-6407
LGG
TCGA
TPETVVPTA
DEG_COP1_1
0.2778
p.P1205H
DO639
BLCA
ICGC
TPETVVPTA
DEG_COP1_1
0.7694
p.P1205S
DO1608
BRCA
ICGC
TPETVVPTA
DEG_COP1_1
0.6752
p.R1216I
DO22237
LGG
ICGC
TPETVVPTA
DEG_COP1_1
0.0556
p.D1198E
DO52172
LIHC
ICGC
TPETVVPTA
DEG_COP1_1
0.6758
p.S1194Y
DO26526
LUSC
ICGC
TPETVVPTA
DEG_COP1_1
0.2222
p.T1195I
DO37406
SKCM
ICGC
TPETVVPTA
DEG_COP1_1
0.25
p.P1189L
DO47337
SKCM
ICGC
TPETVVPTA
DEG_COP1_1
0.0833
p.R1216K
DO41361
UCEC
ICGC
TPETVVPTA
DEG_COP1_1
0.0556
p.T1205A
SIDM00449
B-Lymphoblastic Leukemia
GDSC
TPETVVPTA
DEG_COP1_1
0.7139
p.T1205A
SIDM00685
Glioblastoma
GDSC
TPETVVPTA
DEG_COP1_1
0.7139
p.T1205A
RCH-ACV
haematopoietic_and_lymphoid_tissue
COSMIC
TPETVVPTA
DEG_COP1_1
0.7139
Drug responses associated with MDC1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of TPETVVPTA
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_COP1_1
1198:1206
TPETVVPTA
COP1
0.9906
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_COP1_1
1321:1329
TPETVVPTA
COP1
0.9928
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_COP1_1
1444:1452
TPETVVPTA
COP1
0.9875
More...
Q14676
Mediator of DNA damage checkpoint protein 1
DEG_COP1_1
1485:1493
TPETVVPTA
COP1
0.9658
More...