DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
VDTTS
Uniprot ID:
Q9NV58
Source protein:
E3 ubiquitin-protein ligase RNF19A
Source gene:
RNF19A
Class:
DEG_SPOP_SBC_1
Location:
489:493
E3 ligase:
SPOP
DEGRON score:
0.6051
ASA_SCORE:
70.46
COIL:
0.6344
CONS_SCORE:
0.2645
DSS_SCORE:
0.5282
HELIX:
0.3138
FCONS_SCORE:
1.0383
RIG_SCORE:
0.8059
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V494A
TCGA-2Z-A9J5
KIRP
TCGA
VDTTS
DEG_SPOP_SBC_1
0.3056
p.V494A
DO219654
KIRP
ICGC
VDTTS
DEG_SPOP_SBC_1
0.3056
p.A488T
TCGA-B5-A1MX
UCEC
TCGA
VDTTS
DEG_SPOP_SBC_1
0.3056
p.A488T
DO41999
UCEC
ICGC
VDTTS
DEG_SPOP_SBC_1
0.3056
p.A488T
SIDM00217
Colorectal Carcinoma
GDSC
VDTTS
DEG_SPOP_SBC_1
0.3056
p.A488T
ACH-000999
Colon/Colorectal Cancer
CCLE
VDTTS
DEG_SPOP_SBC_1
0.3056
p.A488T
SNU-1040
large_intestine
COSMIC
VDTTS
DEG_SPOP_SBC_1
0.3056
p.T492A
TCGA-CV-6937
HNSC
TCGA
VDTTS
DEG_SPOP_SBC_1
0.7139
p.T492A
DO14155
HNSC
ICGC
VDTTS
DEG_SPOP_SBC_1
0.7139
p.I480V
TCGA-E7-A85H
BLCA
TCGA
VDTTS
DEG_SPOP_SBC_1
0.0833
p.I480V
DO219018
BLCA
ICGC
VDTTS
DEG_SPOP_SBC_1
0.0833
p.A488S
TCGA-FI-A2D5
UCEC
TCGA
VDTTS
DEG_SPOP_SBC_1
0.3056
p.A488S
DO41331
UCEC
ICGC
VDTTS
DEG_SPOP_SBC_1
0.3056
p.I480M
DO230326
COCA
ICGC
VDTTS
DEG_SPOP_SBC_1
0.0833
p.D490E
DO229022
LICA
ICGC
VDTTS
DEG_SPOP_SBC_1
0.5647
p.T487K
DO229024
LICA
ICGC
VDTTS
DEG_SPOP_SBC_1
0.2778
p.H499N
DO229037
LICA
ICGC
VDTTS
DEG_SPOP_SBC_1
0.1667
p.S502N
DO232761
PBCA
ICGC
VDTTS
DEG_SPOP_SBC_1
0.0833
Drug responses associated with RNF19A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VDTTS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q86XQ3
Cation channel sperm-associated protein 3
DEG_SPOP_SBC_1
18:22
VDTTS
SPOP
0.8307
More...
Q9NV58
E3 ubiquitin-protein ligase RNF19A
DEG_SPOP_SBC_1
489:493
VDTTS
SPOP
0.6051
More...
Q2M2H8
Probable maltase-glucoamylase 2
DEG_SPOP_SBC_1
2191:2195
VDTTS
SPOP
0.9109
More...