DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VKEND
Uniprot ID:
P46778
Source protein:
60S ribosomal protein L21
Source gene:
RPL21
Class:
DEG_APCC_KENBOX_2
Location:
109:113
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5218
ASA_SCORE:
87.98
COIL:
0.2636
CONS_SCORE:
0.5329
DSS_SCORE:
0.5694
HELIX:
0.7312
FCONS_SCORE:
0.9827
RIG_SCORE:
0.7159
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K115N
TCGA-B5-A1MR
UCEC
TCGA
VKEND
DEG_APCC_KENBOX_2
0.2778
p.K115N
DO41758
UCEC
ICGC
VKEND
DEG_APCC_KENBOX_2
0.2778
p.R108C
TCGA-B5-A3FA
UCEC
TCGA
VKEND
DEG_APCC_KENBOX_2
0.3056
p.R108C
DO52402
UCEC
ICGC
VKEND
DEG_APCC_KENBOX_2
0.3056
p.A119T
TCGA-FI-A2D5
UCEC
TCGA
VKEND
DEG_APCC_KENBOX_2
0.1667
p.A119T
DO41331
UCEC
ICGC
VKEND
DEG_APCC_KENBOX_2
0.1667
p.E121Q
DO230950
LUSC
ICGC
VKEND
DEG_APCC_KENBOX_2
0.1111
p.E121Q
DO224638
LUSC
ICGC
VKEND
DEG_APCC_KENBOX_2
0.1111
p.R102Q
DO229253
THCA
ICGC
VKEND
DEG_APCC_KENBOX_2
0.1389
p.R102Q
DO229229
THCA
ICGC
VKEND
DEG_APCC_KENBOX_2
0.1389
p.R102Q
DO229248
THCA
ICGC
VKEND
DEG_APCC_KENBOX_2
0.1389
p.R102Q
DO229245
THCA
ICGC
VKEND
DEG_APCC_KENBOX_2
0.1389
p.E118K
SIDM00516
Melanoma
GDSC
VKEND
DEG_APCC_KENBOX_2
0.1944
p.E118K
ACH-002166
Skin Cancer
CCLE
VKEND
DEG_APCC_KENBOX_2
0.1944
p.E118K
MZ7-mel
skin
COSMIC
VKEND
DEG_APCC_KENBOX_2
0.1944
Drug responses associated with RPL21 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VKEND
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P46778
60S ribosomal protein L21
DEG_APCC_KENBOX_2
109:113
VKEND
APC,CDC20,FZR1
0.5218
More...
Q5QGS0
Neurite extension and migration factor
DEG_APCC_KENBOX_2
23:27
VKEND
APC,CDC20,FZR1
0.8948
More...
Q6P587
Acylpyruvase FAHD1, mitochondrial
DEG_APCC_KENBOX_2
199:203
VKEND
APC,CDC20,FZR1
0.6039
More...