Submit a prediction job

We provide well-trained models for 24 anti-cancer compounds from CCLE and 251 compounds from GDSC. DrVAEN allows users to run the prediction for up to 50 drugs in each job. It will take a few minutes for each job to finish.

DrVAEN provides several options for the prediction models depending on the normalization method (Rank or ZS) and the activation functions in the VAE model (Sigmoid or ReLU) ((please see details in Tutorial).In our evaluation process, we have determined the combination Rank+Sigmoid performs the best. We provided all options for users convenience. In total, DrVAEN can run at most 4 prediction models for each drug: (1) Rank+Sigmoid, (2) ZS+Sigmoid, (3) Rank+ReLU, and (4) ZS+ReLU.

Important note: Each job may take 1-10 minutes to finish. You may retrive the results anytime using the Job Identifier (JID e.g., JOB1234_1234567890). Please do keep a record of the JID.

Input parameters

Job identifier
Model selection
Drug panel
    Check Panel Drug (n = 0; clear all)
    Expression file
    (< 50 MB)