Drug response prediction through deep Variational Autoencoder model enhanced by Elastic Net.

Prediction portal

Input user data to get response to >260 anti-cancer compounds. Example datasets can be downloaded here.


For coming-back users, go here to retrieve results from previous runs with Job IDs.


Predictions on public datasets from TCGA or GEO can be browsed here, with examples for various cancer types.


Explanations for input/output formats and the usage of DrVAEN, as well as details on model construction and training. (Quick Start)


Ruifeng Hu, Peilin Jia, Zhongming Zhao @ CPH, UTHealth-Houston SBMI.

DrVAEN is free and open to all users and there is no login requirement.