Gene: NSD2

Basic information

Tag Content
Uniprot ID O96028; A2A2T2; A2A2T3; A2A2T4; A7MCZ1; D3DVQ2; O96031; Q4VBY8; Q672J1; Q6IS00; Q86V01; Q9BZB4; Q9UI92; Q9UPR2;
Entrez ID 7468
Genbank protein ID AAD21771.1; BAA83042.2; AAI52413.1; AAC24150.1; AAU09264.1; AAH52254.1; AAD19346.1; EAW82552.1; EAW82548.1; AAD19343.1; AAD19345.1; AAC24151.1; BAF82386.1; EAW82553.1; AAH70176.1; AAH94825.2; AAF23369.1; EAW82557.1; AAD19344.1; CAB45386.1; AAK00344.1; AAD21770.1; AAF23370.1; EAW82556.1; AAI41816.1;
Genbank nucleotide ID XM_011513557.2; NM_133330.2; XM_006713914.3; NM_133335.3; XM_005248001.3; XM_017008587.1; XM_017008588.1; NM_007331.1; NM_001042424.2; XM_011513560.2; XM_005248005.2; NM_133334.2; NM_133331.2;
Ensembl protein ID ENSP00000425761; ENSP00000423972; ENSP00000399251; ENSP00000372347; ENSP00000381311; ENSP00000421681; ENSP00000329167; ENSP00000372348; ENSP00000372351; ENSP00000308780; ENSP00000416725; ENSP00000427516; ENSP00000372344;
Ensembl nucleotide ID ENSG00000109685
Gene name Histone-lysine N-methyltransferase NSD2
Gene symbol NSD2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Histone methyltransferase with histone H3 'Lys-27' (H3K27me) methyltransferase activity forming trimethylated 'Lys-27' (H3K27me3). Isoform 2 may act as a transcription regulator that binds DNA and suppresses IL5 transcription through HDAC recruitment.
Sequence
MEFSIKQSPL SVQSVVKCIK MKQAPEILGS ANGKTPSCEV NRECSVFLSK AQLSSSLQEG 60
VMQKFNGHDA LPFIPADKLK DLTSRVFNGE PGAHDAKLRF ESQEMKGIGT PPNTTPIKNG 120
SPEIKLKITK TYMNGKPLFE SSICGDSAAD VSQSEENGQK PENKARRNRK RSIKYDSLLE 180
QGLVEAALVS KISSPSDKKI PAKKESCPNT GRDKDHLLKY NVGDLVWSKV SGYPWWPCMV 240
SADPLLHSYT KLKGQKKSAR QYHVQFFGDA PERAWIFEKS LVAFEGEGQF EKLCQESAKQ 300
APTKAEKIKL LKPISGKLRA QWEMGIVQAE EAASMSVEER KAKFTFLYVG DQLHLNPQVA 360
KEAGIAAESL GEMAESSGVS EEAAENPKSV REECIPMKRR RRAKLCSSAE TLESHPDIGK 420
STPQKTAEAD PRRGVGSPPG RKKTTVSMPR SRKGDAASQF LVFCQKHRDE VVAEHPDASG 480
EEIEELLRSQ WSLLSEKQRA RYNTKFALVA PVQAEEDSGN VNGKKRNHTK RIQDPTEDAE 540
AEDTPRKRLR TDKHSLRKRD TITDKTARTS SYKAMEAASS LKSQAATKNL SDACKPLKKR 600
NRASTAASSA LGFSKSSSPS ASLTENEVSD SPGDEPSESP YESADETQTE VSVSSKKSER 660
GVTAKKEYVC QLCEKPGSLL LCEGPCCGAF HLACLGLSRR PEGRFTCSEC ASGIHSCFVC 720
KESKTDVKRC VVTQCGKFYH EACVKKYPLT VFESRGFRCP LHSCVSCHAS NPSNPRPSKG 780
KMMRCVRCPV AYHSGDACLA AGCSVIASNS IICTAHFTAR KGKRHHAHVN VSWCFVCSKG 840
GSLLCCESCP AAFHPDCLNI EMPDGSWFCN DCRAGKKLHF QDIIWVKLGN YRWWPAEVCH 900
PKNVPPNIQK MKHEIGEFPV FFFGSKDYYW THQARVFPYM EGDRGSRYQG VRGIGRVFKN 960
ALQEAEARFR EIKLQREARE TQESERKPPP YKHIKVNKPY GKVQIYTADI SEIPKCNCKP 1020
TDENPCGFDS ECLNRMLMFE CHPQVCPAGE FCQNQCFTKR QYPETKIIKT DGKGWGLVAK 1080
RDIRKGEFVN EYVGELIDEE ECMARIKHAH ENDITHFYML TIDKDRIIDA GPKGNYSRFM 1140
NHSCQPNCET LKWTVNGDTR VGLFAVCDIP AGTELTFNYN LDCLGNEKTV CRCGASNCSG 1200
FLGDRPKTST TLSSEEKGKK TKKKTRRRRA KGEGKRQSED ECFRCGDGGQ LVLCDRKFCT 1260
KAYHLSCLGL GKRPFGKWEC PWHHCDVCGK PSTSFCHLCP NSFCKEHQDG TAFSCTPDGR 1320
SYCCEHDLGA ASVRSTKTEK PPPEPGKPKG KRRRRRGWRR VTEGK 1365

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologNSD2102186471A0A452E027Capra hircusPredictionMore>>
1:1 orthologNSD2A0A5F5PRN6Equus caballusPredictionMore>>
1:1 orthologNSD27468O96028Homo sapiensPredictionMore>>
1:1 orthologNsd2107823Q8BVE8CPOE13.5Mus musculusPublicationMore>>
1:1 orthologNSD2461070H2QP41Pan troglodytesPredictionMore>>
1:1 orthologNSD2F1S8S1Sus scrofaPredictionMore>>
1:1 orthologNsd2680537D4A9J4Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISM
GO:0003682 chromatin bindingIEA
GO:0005515 protein bindingIPI
GO:0042799 histone methyltransferase activity (H4-K20 specific)TAS
GO:0043565 sequence-specific DNA bindingIEA
GO:0046872 metal ion bindingIEA
GO:0046975 histone methyltransferase activity (H3-K36 specific)IBA

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIIEA
GO:0003149 membranous septum morphogenesisIEA
GO:0003289 atrial septum primum morphogenesisIEA
GO:0003290 atrial septum secundum morphogenesisIEA
GO:0006303 double-strand break repair via nonhomologous end joiningTAS
GO:0006355 regulation of transcription, DNA-templatedIBA
GO:0010452 histone H3-K36 methylationIEA
GO:0034770 histone H4-K20 methylationIEA
GO:0048298 positive regulation of isotype switching to IgA isotypesIEA
GO:0060348 bone developmentIEA
GO:0070201 regulation of establishment of protein localizationIEA
GO:2001032 regulation of double-strand break repair via nonhomologous end joiningIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0000785 chromatinIBA
GO:0005634 nucleusIBA
GO:0005654 nucleoplasmIDA
GO:0005654 nucleoplasmTAS
GO:0005737 cytoplasmIEA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1640170 Cell CycleTAS
R-HSA-3214841 PKMTs methylate histone lysinesTAS
R-HSA-3247509 Chromatin modifying enzymesTAS
R-HSA-4839726 Chromatin organizationTAS
R-HSA-5693532 DNA Double-Strand Break RepairTAS
R-HSA-5693538 Homology Directed RepairTAS
R-HSA-5693565 Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaksTAS
R-HSA-5693567 HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA)TAS
R-HSA-5693571 Nonhomologous End-Joining (NHEJ)TAS
R-HSA-5693606 DNA Double Strand Break ResponseTAS
R-HSA-5693607 Processing of DNA double-strand break endsTAS
R-HSA-69473 G2/M DNA damage checkpointTAS
R-HSA-69481 G2/M CheckpointsTAS
R-HSA-69620 Cell Cycle CheckpointsTAS
R-HSA-73894 DNA RepairTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0156 Chromatin regulator
KW-0160 Chromosomal rearrangement
KW-0158 Chromosome
KW-0963 Cytoplasm
KW-0238 DNA-binding
KW-0479 Metal-binding
KW-0489 Methyltransferase
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-0656 Proto-oncogene
KW-1185 Reference proteome
KW-0677 Repeat
KW-0949 S-adenosyl-L-methionine
KW-0804 Transcription
KW-0805 Transcription regulation
KW-0808 Transferase
KW-0862 Zinc
KW-0863 Zinc-finger

Interpro

InterPro ID InterPro Term
IPR006560 AWS_dom
IPR041306 C5HCH
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
IPR003616 Post-SET_dom
IPR000313 PWWP_dom
IPR001214 SET_dom
IPR019786 Zinc_finger_PHD-type_CS
IPR011011 Znf_FYVE_PHD
IPR001965 Znf_PHD
IPR019787 Znf_PHD-finger
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD

PROSITE

PROSITE ID PROSITE Term
PS51215 AWS
PS50118 HMG_BOX_2
PS50868 POST_SET
PS50812 PWWP
PS50280 SET
PS01359 ZF_PHD_1
PS50016 ZF_PHD_2

Pfam

Pfam ID Pfam Term
PF17907 AWS
PF17982 C5HCH
PF00505 HMG_box
PF00855 PWWP
PF00856 SET

Protein-miRNA interaction