Gene: PDGFRA

Basic information

Tag Content
Uniprot ID P16234; B2RE69; E9PBH0; Q6P4H5; Q96KZ7; Q9UD28;
Entrez ID 5156
Genbank protein ID AAP69563.1; BAA08742.1; AAH15186.1; AAA60048.1; AAA96715.1; BAG38166.1; AAH63414.1;
Genbank nucleotide ID XM_005265743.1; NM_001347829.1; NM_006206.5;
Ensembl protein ID ENSP00000424218; ENSP00000425648; ENSP00000257290;
Ensembl nucleotide ID ENSG00000134853
Gene name Platelet-derived growth factor receptor alpha
Gene symbol PDGFRA
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Tyrosine-protein kinase that acts as a cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development and cephalic closure during embryonic development. Required for normal development of the mucosa lining the gastrointestinal tract, and for recruitment of mesenchymal cells and normal development of intestinal villi. Plays a role in cell migration and chemotaxis in wound healing. Plays a role in platelet activation, secretion of agonists from platelet granules, and in thrombin-induced platelet aggregation. Binding of its cognate ligands - homodimeric PDGFA, homodimeric PDGFB, heterodimers formed by PDGFA and PDGFB or homodimeric PDGFC -leads to the activation of several signaling cascades; the response depends on the nature of the bound ligand and is modulated by the formation of heterodimers between PDGFRA and PDGFRB. Phosphorylates PIK3R1, PLCG1, and PTPN11. Activation of PLCG1 leads to the production of the cellular signaling molecules diacylglycerol and inositol 1,4,5-trisphosphate, mobilization of cytosolic Ca(2+) and the activation of protein kinase C. Phosphorylates PIK3R1, the regulatory subunit of phosphatidylinositol 3-kinase, and thereby mediates activation of the AKT1 signaling pathway. Mediates activation of HRAS and of the MAP kinases MAPK1/ERK2 and/or MAPK3/ERK1. Promotes activation of STAT family members STAT1, STAT3 and STAT5A and/or STAT5B. Receptor signaling is down-regulated by protein phosphatases that dephosphorylate the receptor and its down-stream effectors, and by rapid internalization of the activated receptor.
Sequence
MGTSHPAFLV LGCLLTGLSL ILCQLSLPSI LPNENEKVVQ LNSSFSLRCF GESEVSWQYP 60
MSEEESSDVE IRNEENNSGL FVTVLEVSSA SAAHTGLYTC YYNHTQTEEN ELEGRHIYIY 120
VPDPDVAFVP LGMTDYLVIV EDDDSAIIPC RTTDPETPVT LHNSEGVVPA SYDSRQGFNG 180
TFTVGPYICE ATVKGKKFQT IPFNVYALKA TSELDLEMEA LKTVYKSGET IVVTCAVFNN 240
EVVDLQWTYP GEVKGKGITM LEEIKVPSIK LVYTLTVPEA TVKDSGDYEC AARQATREVK 300
EMKKVTISVH EKGFIEIKPT FSQLEAVNLH EVKHFVVEVR AYPPPRISWL KNNLTLIENL 360
TEITTDVEKI QEIRYRSKLK LIRAKEEDSG HYTIVAQNED AVKSYTFELL TQVPSSILDL 420
VDDHHGSTGG QTVRCTAEGT PLPDIEWMIC KDIKKCNNET SWTILANNVS NIITEIHSRD 480
RSTVEGRVTF AKVEETIAVR CLAKNLLGAE NRELKLVAPT LRSELTVAAA VLVLLVIVII 540
SLIVLVVIWK QKPRYEIRWR VIESISPDGH EYIYVDPMQL PYDSRWEFPR DGLVLGRVLG 600
SGAFGKVVEG TAYGLSRSQP VMKVAVKMLK PTARSSEKQA LMSELKIMTH LGPHLNIVNL 660
LGACTKSGPI YIITEYCFYG DLVNYLHKNR DSFLSHHPEK PKKELDIFGL NPADESTRSY 720
VILSFENNGD YMDMKQADTT QYVPMLERKE VSKYSDIQRS LYDRPASYKK KSMLDSEVKN 780
LLSDDNSEGL TLLDLLSFTY QVARGMEFLA SKNCVHRDLA ARNVLLAQGK IVKICDFGLA 840
RDIMHDSNYV SKGSTFLPVK WMAPESIFDN LYTTLSDVWS YGILLWEIFS LGGTPYPGMM 900
VDSTFYNKIK SGYRMAKPDH ATSEVYEIMV KCWNSEPEKR PSFYHLSEIV ENLLPGQYKK 960
SYEKIHLDFL KSDHPAVARM RVDSDNAYIG VTYKNEEDKL KDWEGGLDEQ RLSADSGYII 1020
PLPDIDPVPE EEDLGKRNRH SSQTSEESAI ETGSSSSTFI KREDETIEDI DMMDDIGIDS 1080
SDLVEDSFL 1089

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPDGFRA282301F1MX49Bos taurusPredictionMore>>
1:1 orthologPDGFRA442860A0A5F4CSF2Canis lupus familiarisPredictionMore>>
1:1 orthologPDGFRA102174007A0A452DR61Capra hircusPredictionMore>>
1:1 orthologPDGFRA100059815F7A2X2Equus caballusPredictionMore>>
1:1 orthologPDGFRA5156P16234Homo sapiensPredictionMore>>
1:1 orthologPdgfra18595P26618CPOE12.5, E13.5, E14.5Mus musculusPublicationMore>>
1:1 orthologPDGFRA461318H2QPH4Pan troglodytesPredictionMore>>
1:1 orthologPDGFRAA0A287AYB4Sus scrofaPredictionMore>>
1:1 orthologPdgfra25267G3V6A0Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

loading...

Disease or phenotype associated information

loading...

Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0004672 protein kinase activityIDA
GO:0004714 transmembrane receptor protein tyrosine kinase activityIDA
GO:0004714 transmembrane receptor protein tyrosine kinase activityIBA
GO:0005018 platelet-derived growth factor alpha-receptor activityIDA
GO:0005018 platelet-derived growth factor alpha-receptor activityIBA
GO:0005018 platelet-derived growth factor alpha-receptor activityIMP
GO:0005021 vascular endothelial growth factor-activated receptor activityIDA
GO:0005161 platelet-derived growth factor receptor bindingIPI
GO:0005515 protein bindingIPI
GO:0005524 ATP bindingIEA
GO:0019838 growth factor bindingIBA
GO:0038085 vascular endothelial growth factor bindingIPI
GO:0042803 protein homodimerization activityIDA
GO:0044877 protein-containing complex bindingIEA
GO:0048407 platelet-derived growth factor bindingIPI
GO:0048407 platelet-derived growth factor bindingIBA
GO:0048407 platelet-derived growth factor bindingIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0000165 MAPK cascadeTAS
GO:0001553 luteinizationISS
GO:0001701 in utero embryonic developmentIEA
GO:0001775 cell activationTAS
GO:0002244 hematopoietic progenitor cell differentiationIBA
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathwayIBA
GO:0007204 positive regulation of cytosolic calcium ion concentrationIMP
GO:0007275 multicellular organism developmentIBA
GO:0008210 estrogen metabolic processIEA
GO:0008284 positive regulation of cell population proliferationIDA
GO:0008284 positive regulation of cell population proliferationIMP
GO:0010544 negative regulation of platelet activationIDA
GO:0010863 positive regulation of phospholipase C activityIMP
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signalingTAS
GO:0016032 viral processIEA
GO:0018108 peptidyl-tyrosine phosphorylationIDA
GO:0023019 signal transduction involved in regulation of gene expressionIEA
GO:0030198 extracellular matrix organizationIEA
GO:0030324 lung developmentIEA
GO:0030325 adrenal gland developmentIEA
GO:0030335 positive regulation of cell migrationIMP
GO:0030335 positive regulation of cell migrationIDA
GO:0030539 male genitalia developmentIEA
GO:0033327 Leydig cell differentiationIEA
GO:0033674 positive regulation of kinase activityIBA
GO:0034614 cellular response to reactive oxygen speciesIDA
GO:0035790 platelet-derived growth factor receptor-alpha signaling pathwayIMP
GO:0038091 positive regulation of cell proliferation by VEGF-activated platelet derived growth factor receptor signaling pathwayIDA
GO:0042060 wound healingISS
GO:0042475 odontogenesis of dentin-containing toothIEA
GO:0043552 positive regulation of phosphatidylinositol 3-kinase activityIMP
GO:0046777 protein autophosphorylationIDA
GO:0048008 platelet-derived growth factor receptor signaling pathwayIDA
GO:0048015 phosphatidylinositol-mediated signalingIMP
GO:0048146 positive regulation of fibroblast proliferationIDA
GO:0048557 embryonic digestive tract morphogenesisISS
GO:0048701 embryonic cranial skeleton morphogenesisISS
GO:0048704 embryonic skeletal system morphogenesisISS
GO:0050920 regulation of chemotaxisIMP
GO:0051897 positive regulation of protein kinase B signalingTAS
GO:0055003 cardiac myofibril assemblyISS
GO:0060021 roof of mouth developmentIEA
GO:0060325 face morphogenesisIEA
GO:0060326 cell chemotaxisIMP
GO:0061298 retina vasculature development in camera-type eyeISS
GO:0070374 positive regulation of ERK1 and ERK2 cascadeIMP
GO:0070527 platelet aggregationIMP
GO:0071230 cellular response to amino acid stimulusIEA
GO:0072277 metanephric glomerular capillary formationISS
GO:2000249 regulation of actin cytoskeleton reorganizationTAS
GO:2000739 regulation of mesenchymal stem cell differentiationIMP

GO:Cellular Component

GO ID GO Term Evidence
GO:0005623 cellIEA
GO:0005634 nucleusISS
GO:0005654 nucleoplasmIDA
GO:0005737 cytoplasmISS
GO:0005794 Golgi apparatusISS
GO:0005886 plasma membraneIDA
GO:0005886 plasma membraneTAS
GO:0005887 integral component of plasma membraneIBA
GO:0005887 integral component of plasma membraneIDA
GO:0005902 microvillusIEA
GO:0005929 ciliumISS
GO:0009897 external side of plasma membraneIEA
GO:0016020 membraneHDA
GO:0030054 cell junctionIDA
GO:0031226 intrinsic component of plasma membraneIDA
GO:0032991 protein-containing complexIDA
GO:0043235 receptor complexIBA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1257604 PIP3 activates AKT signalingTAS
R-HSA-1280215 Cytokine Signaling in Immune systemTAS
R-HSA-162582 Signal TransductionTAS
R-HSA-1643685 DiseaseTAS
R-HSA-168256 Immune SystemTAS
R-HSA-186763 Downstream signal transductionTAS
R-HSA-186797 Signaling by PDGFTAS
R-HSA-199418 Negative regulation of the PI3K/AKT networkTAS
R-HSA-2219528 PI3K/AKT Signaling in CancerTAS
R-HSA-2219530 Constitutive Signaling by Aberrant PI3K in CancerTAS
R-HSA-5663202 Diseases of signal transductionTAS
R-HSA-5673001 RAF/MAP kinase cascadeTAS
R-HSA-5683057 MAPK family signaling cascadesTAS
R-HSA-5684996 MAPK1/MAPK3 signalingTAS
R-HSA-6811558 PI5P, PP2A and IER3 Regulate PI3K/AKT SignalingTAS
R-HSA-9006925 Intracellular signaling by second messengersTAS
R-HSA-9006934 Signaling by Receptor Tyrosine KinasesTAS
R-HSA-9607240 FLT3 SignalingTAS

Drugs and compounds information

loading...

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0067 ATP-binding
KW-1003 Cell membrane
KW-0966 Cell projection
KW-0145 Chemotaxis
KW-0217 Developmental protein
KW-0225 Disease mutation
KW-1015 Disulfide bond
KW-0325 Glycoprotein
KW-0333 Golgi apparatus
KW-0945 Host-virus interaction
KW-0393 Immunoglobulin domain
KW-0418 Kinase
KW-0472 Membrane
KW-0547 Nucleotide-binding
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-0656 Proto-oncogene
KW-0675 Receptor
KW-1185 Reference proteome
KW-0677 Repeat
KW-0732 Signal
KW-0808 Transferase
KW-0812 Transmembrane
KW-1133 Transmembrane helix
KW-0829 Tyrosine-protein kinase
KW-0832 Ubl conjugation

Interpro

InterPro ID InterPro Term
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR013098 Ig_I-set
IPR003599 Ig_sub
IPR003598 Ig_sub2
IPR011009 Kinase-like_dom_sf
IPR027290 PDGFRA
IPR000719 Prot_kinase_dom
IPR017441 Protein_kinase_ATP_BS
IPR001245 Ser-Thr/Tyr_kinase_cat_dom
IPR008266 Tyr_kinase_AS
IPR020635 Tyr_kinase_cat_dom
IPR001824 Tyr_kinase_rcpt_3_CS

PROSITE

PROSITE ID PROSITE Term
PS50835 IG_LIKE
PS00107 PROTEIN_KINASE_ATP
PS50011 PROTEIN_KINASE_DOM
PS00109 PROTEIN_KINASE_TYR
PS00240 RECEPTOR_TYR_KIN_III

Pfam

Pfam ID Pfam Term
PF07679 I-set
PF07714 Pkinase_Tyr

Protein-protein interaction

Protein-miRNA interaction