Copy number variation (CNV) loci in schizophrenia

Locus Study Position (Mb) Frequency in cases Frequency in controls P OR References
1q21.1 del CNV:Levinson_2011 chr1:145.0-148.0 0.0018 0.0002 8E-6 9.5 21285140
CNV:Rees_2014 chr1:146.57-147.39 0.0017 0.00016 2.7E-3 11.03 (1.43-84.86) 24311552
2p16.3 CNV:Levinson_2011 chr2:50.1-51.2 0.0018 0.00002 1E-6 7.5 21285140
CNV:Rees_2014 chr2:50.15-51.26 0.0016 0.0000 7.7E-4 NA (1.25-inf) 24311552
3q29 CNV:Levinson_2011 chr3:195.7-197.3 0.0010 0 4E-4 3.8 21285140
CNV:Rees_2014 chr3:195.73-197.34 0.00058 0.0000 0.074 NA (0.44-inf) 24311552
7q11.23 CNV:Sanders_2011 chr7:72.7-74.1 0.0011 3E-3 21658581
CNV:Rees_2014 chr7:72.74-74.14 0.00044 0.00016 0.35 2.75 (0.29-26.48) 24311552
7q36.3 CNV:Levinson_2011 chr7:158.8-158.9 0.0024 0.0001 4E-5 16.4 21285140
CNV:Rees_2014 chr7:158,82-158,94 0.00015 0.00095 0.99 0.15 (0.02-1.27) 24311552
15q11.2 CNV:Rees_2014 chr15:22,80-23,09 0.0064 0.0041 0.046 1.56 (0.96-2.53) 24311552
AS/PWS dup CNV:Rees_2014 chr15:24,82-28,43 0.0012 0.0 0.0055 NA (0.90-inf) 24311552
15q13.3 del CNV:Levinson_2011 chr15:30.9-33.5 0.0019 0.0002 7E-7 12.1 21285140
CNV:Rees_2014 chr15:31,13-32,48 0.00058 0.00032 0.38 1.84 (0.34-10.03) 24311552
16p13.11 dup CNV:Rees_2014 chr16:15,51-16,30 0.0035 0.0019 0.056 1.84 (0.92-3.68) 21285140
16p11.2 dup CNV:Levinson_2011 chr16:29.5-30.2 0.0031 0.0003 3E-8 9.5 21285140
CNV:Rees_2014 chr16:29,64-30,20 0.0039 0.0 2.3E-8 NA (3.09-inf) 24311552
17q12 del CNV:Levinson_2011 chr17:34.8-36.2 0.0006 0.0000 3E-4 4.49 21055719
CNV:Rees_2014 chr17:34.81-36.20 0.00015 0.0 0.52 1.22 (0.27-5.47) 24311552
22q11.21 del CNV:Levinson_2011 chr22:18.7-21.8 0.0031 0.0000 7E-13 20.3 21055719
CNV:Rees_2014 chr22:19.02-20.26 0.0029 0.0 2.2E-6 NA (2.28-inf) 24311552