Gene Page: NBPF20
Summary ?
| GeneID | 100288142 |
| Symbol | NBPF20 |
| Synonyms | - |
| Description | neuroblastoma breakpoint family member 20 |
| Reference | MIM:614007|HGNC:HGNC:32000|Ensembl:ENSG00000162825|Vega:OTTHUMG00000042439 |
| Gene type | protein-coding |
| Map location | 1q21.2 |
| DMG | 1 (# studies) |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CNV:YES | Copy number variation studies | Manual curation | |
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| DMG:Jaffe_2016 | Genome-wide DNA methylation analysis | This dataset includes 2,104 probes/CpGs associated with SZ patients (n=108) compared to 136 controls at Bonferroni-adjusted P < 0.05. | 4 |
| GSMA_I | Genome scan meta-analysis | Psr: 0.0235 | |
| GSMA_IIA | Genome scan meta-analysis (All samples) | Psr: 0.00814 |
Section I. Genetics and epigenetics annotation
Differentially methylated gene
| Probe | Chromosome | Position | Nearest gene | P (dis) | Beta (dis) | FDR (dis) | Study |
|---|---|---|---|---|---|---|---|
| cg16381028 | 1 | 145589138 | NBPF20 | 3.77E-9 | -0.01 | 2.38E-6 | DMG:Jaffe_2016 |
| cg19413110 | 1 | 145470355 | NBPF20 | 2.4E-8 | -0.008 | 7.84E-6 | DMG:Jaffe_2016 |
| cg05768362 | 1 | 145575570 | NBPF20 | 3.67E-8 | -0.01 | 1.06E-5 | DMG:Jaffe_2016 |
| cg04213235 | 1 | 145826932 | NBPF20 | 7.72E-8 | -0.008 | 1.82E-5 | DMG:Jaffe_2016 |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.