Gene Page: CEP250
Summary ?
| GeneID | 11190 |
| Symbol | CEP250 |
| Synonyms | C-NAP1|CEP2|CNAP1 |
| Description | centrosomal protein 250kDa |
| Reference | MIM:609689|HGNC:HGNC:1859|HPRD:09877| |
| Gene type | protein-coding |
| Map location | 20q11.22 |
| Pascal p-value | 0.387 |
| Sherlock p-value | 0.712 |
| Fetal beta | 0.264 |
| DMG | 1 (# studies) |
| eGene | Anterior cingulate cortex BA24 Caudate basal ganglia Cerebellar Hemisphere Cerebellum Cortex Frontal Cortex BA9 Nucleus accumbens basal ganglia Putamen basal ganglia Myers' cis & trans Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| DMG:Wockner_2014 | Genome-wide DNA methylation analysis | This dataset includes 4641 differentially methylated probes corresponding to 2929 unique genes between schizophrenia patients (n=24) and controls (n=24). | 2 |
Section I. Genetics and epigenetics annotation
Differentially methylated gene
| Probe | Chromosome | Position | Nearest gene | P (dis) | Beta (dis) | FDR (dis) | Study |
|---|---|---|---|---|---|---|---|
| cg24531267 | 20 | 34043122 | CEP250 | 4.6E-7 | -0.414 | 0.006 | DMG:Wockner_2014 |
| cg03424436 | 20 | 34043664 | CEP250 | 2.1E-4 | 0.465 | 0.035 | DMG:Wockner_2014 |
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs1570841 | chr20 | 34048160 | CEP250 | 11190 | 0.02 | cis | ||
| rs1886696 | chr20 | 34055705 | CEP250 | 11190 | 0.02 | cis | ||
| rs6060431 | chr20 | 34059336 | CEP250 | 11190 | 0.02 | cis | ||
| rs6060435 | chr20 | 34069369 | CEP250 | 11190 | 0.13 | cis | ||
| rs4911509 | chr20 | 34087308 | CEP250 | 11190 | 0.01 | cis | ||
| rs6060442 | chr20 | 34093756 | CEP250 | 11190 | 0.03 | cis | ||
| rs2236160 | chr20 | 34101820 | CEP250 | 11190 | 0.04 | cis | ||
| rs6119625 | chr20 | 34160454 | CEP250 | 11190 | 0.02 | cis | ||
| rs6088887 | chr20 | 34171323 | CEP250 | 11190 | 0.02 | cis | ||
| rs6120998 | chr20 | 34187312 | CEP250 | 11190 | 0.02 | cis | ||
| rs3746410 | chr20 | 34190869 | CEP250 | 11190 | 0.07 | cis | ||
| rs6060578 | chr20 | 34305444 | CEP250 | 11190 | 0.08 | cis | ||
| rs2425125 | chr20 | 34330953 | CEP250 | 11190 | 0.13 | cis | ||
| rs1970357 | chr20 | 34339199 | CEP250 | 11190 | 0.1 | cis | ||
| rs6058247 | 20 | 34033548 | CEP250 | ENSG00000126001.11 | 3.767E-6 | 0 | -9437 | gtex_brain_ba24 |
| rs224343 | 20 | 34036699 | CEP250 | ENSG00000126001.11 | 2.015E-7 | 0 | -6286 | gtex_brain_ba24 |
| rs224344 | 20 | 34036865 | CEP250 | ENSG00000126001.11 | 5.885E-7 | 0 | -6120 | gtex_brain_ba24 |
| rs224347 | 20 | 34037523 | CEP250 | ENSG00000126001.11 | 1.74E-7 | 0 | -5462 | gtex_brain_ba24 |
| rs6119609 | 20 | 34039394 | CEP250 | ENSG00000126001.11 | 2.616E-7 | 0 | -3591 | gtex_brain_ba24 |
| rs224348 | 20 | 34043946 | CEP250 | ENSG00000126001.11 | 1.785E-7 | 0 | 961 | gtex_brain_ba24 |
| rs6120951 | 20 | 34045191 | CEP250 | ENSG00000126001.11 | 2.637E-6 | 0 | 2206 | gtex_brain_ba24 |
| rs224349 | 20 | 34045392 | CEP250 | ENSG00000126001.11 | 1.256E-7 | 0 | 2407 | gtex_brain_ba24 |
| rs12480121 | 20 | 34045513 | CEP250 | ENSG00000126001.11 | 2.668E-6 | 0 | 2528 | gtex_brain_ba24 |
| rs148230548 | 20 | 34045591 | CEP250 | ENSG00000126001.11 | 5.135E-6 | 0 | 2606 | gtex_brain_ba24 |
| rs58458373 | 20 | 34045611 | CEP250 | ENSG00000126001.11 | 2.675E-6 | 0 | 2626 | gtex_brain_ba24 |
| rs3818441 | 20 | 34046501 | CEP250 | ENSG00000126001.11 | 2.756E-6 | 0 | 3516 | gtex_brain_ba24 |
| rs397805541 | 20 | 34047055 | CEP250 | ENSG00000126001.11 | 2.066E-6 | 0 | 4070 | gtex_brain_ba24 |
| rs1570841 | 20 | 34048161 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 5176 | gtex_brain_ba24 |
| rs736031 | 20 | 34048625 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 5640 | gtex_brain_ba24 |
| rs736032 | 20 | 34048661 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 5676 | gtex_brain_ba24 |
| rs3055798 | 20 | 34049219 | CEP250 | ENSG00000126001.11 | 4.174E-6 | 0 | 6234 | gtex_brain_ba24 |
| rs224351 | 20 | 34052273 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 9288 | gtex_brain_ba24 |
| rs224352 | 20 | 34052604 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 9619 | gtex_brain_ba24 |
| rs8116304 | 20 | 34054409 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 11424 | gtex_brain_ba24 |
| rs224354 | 20 | 34054609 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 11624 | gtex_brain_ba24 |
| rs2296402 | 20 | 34054729 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 11744 | gtex_brain_ba24 |
| rs5841213 | 20 | 34055453 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 12468 | gtex_brain_ba24 |
| rs1886696 | 20 | 34055706 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 12721 | gtex_brain_ba24 |
| rs6060430 | 20 | 34056952 | CEP250 | ENSG00000126001.11 | 3.633E-6 | 0 | 13967 | gtex_brain_ba24 |
| rs6060431 | 20 | 34059337 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 16352 | gtex_brain_ba24 |
| rs6120954 | 20 | 34059536 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 16551 | gtex_brain_ba24 |
| rs224360 | 20 | 34059675 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 16690 | gtex_brain_ba24 |
| rs2281849 | 20 | 34060286 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 17301 | gtex_brain_ba24 |
| rs224361 | 20 | 34061578 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 18593 | gtex_brain_ba24 |
| rs224362 | 20 | 34062642 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 19657 | gtex_brain_ba24 |
| rs224363 | 20 | 34062710 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 19725 | gtex_brain_ba24 |
| rs4911502 | 20 | 34063034 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 20049 | gtex_brain_ba24 |
| rs4911503 | 20 | 34063095 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 20110 | gtex_brain_ba24 |
| rs224364 | 20 | 34063865 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 20880 | gtex_brain_ba24 |
| rs6119612 | 20 | 34065125 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 22140 | gtex_brain_ba24 |
| rs6119613 | 20 | 34065195 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 22210 | gtex_brain_ba24 |
| rs2004554 | 20 | 34066312 | CEP250 | ENSG00000126001.11 | 3.9E-6 | 0 | 23327 | gtex_brain_ba24 |
| rs224366 | 20 | 34066346 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 23361 | gtex_brain_ba24 |
| rs750487 | 20 | 34066645 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 23660 | gtex_brain_ba24 |
| rs6060434 | 20 | 34068382 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 25397 | gtex_brain_ba24 |
| rs6060435 | 20 | 34069370 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 26385 | gtex_brain_ba24 |
| rs224368 | 20 | 34070380 | CEP250 | ENSG00000126001.11 | 1.922E-6 | 0 | 27395 | gtex_brain_ba24 |
| rs224370 | 20 | 34073379 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 30394 | gtex_brain_ba24 |
| rs224371 | 20 | 34074831 | CEP250 | ENSG00000126001.11 | 2.923E-8 | 0 | 31846 | gtex_brain_ba24 |
| rs11698935 | 20 | 34075015 | CEP250 | ENSG00000126001.11 | 3.341E-6 | 0 | 32030 | gtex_brain_ba24 |
| rs201192695 | 20 | 34075686 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 32701 | gtex_brain_ba24 |
| rs58355182 | 20 | 34075687 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 32702 | gtex_brain_ba24 |
| rs55969606 | 20 | 34075688 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 32703 | gtex_brain_ba24 |
| rs6119614 | 20 | 34076780 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 33795 | gtex_brain_ba24 |
| rs6060438 | 20 | 34077403 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 34418 | gtex_brain_ba24 |
| rs6120959 | 20 | 34077848 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 34863 | gtex_brain_ba24 |
| rs6058254 | 20 | 34079494 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 36509 | gtex_brain_ba24 |
| rs224375 | 20 | 34080675 | CEP250 | ENSG00000126001.11 | 2.832E-8 | 0 | 37690 | gtex_brain_ba24 |
| rs224378 | 20 | 34088764 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 45779 | gtex_brain_ba24 |
| rs4911510 | 20 | 34093153 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 50168 | gtex_brain_ba24 |
| rs6060442 | 20 | 34093757 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 50772 | gtex_brain_ba24 |
| rs4281980 | 20 | 34096581 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 53596 | gtex_brain_ba24 |
| rs2236165 | 20 | 34096725 | CEP250 | ENSG00000126001.11 | 4.47E-6 | 0 | 53740 | gtex_brain_ba24 |
| rs224381 | 20 | 34097136 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 54151 | gtex_brain_ba24 |
| rs2236164 | 20 | 34097353 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 54368 | gtex_brain_ba24 |
| rs10359 | 20 | 34099789 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 56804 | gtex_brain_ba24 |
| rs2236161 | 20 | 34101631 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 58646 | gtex_brain_ba24 |
| rs2236160 | 20 | 34101821 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 58836 | gtex_brain_ba24 |
| rs2236159 | 20 | 34102189 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 59204 | gtex_brain_ba24 |
| rs6060445 | 20 | 34105634 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 62649 | gtex_brain_ba24 |
| rs224390 | 20 | 34105975 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 62990 | gtex_brain_ba24 |
| rs224391 | 20 | 34107160 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 64175 | gtex_brain_ba24 |
| rs224392 | 20 | 34107956 | CEP250 | ENSG00000126001.11 | 1.349E-7 | 0 | 64971 | gtex_brain_ba24 |
| rs139589520 | 20 | 34108102 | CEP250 | ENSG00000126001.11 | 2.847E-6 | 0 | 65117 | gtex_brain_ba24 |
| rs224393 | 20 | 34108260 | CEP250 | ENSG00000126001.11 | 1.163E-7 | 0 | 65275 | gtex_brain_ba24 |
| rs11167267 | 20 | 34109273 | CEP250 | ENSG00000126001.11 | 2.903E-6 | 0 | 66288 | gtex_brain_ba24 |
| rs224395 | 20 | 34109427 | CEP250 | ENSG00000126001.11 | 1.365E-7 | 0 | 66442 | gtex_brain_ba24 |
| rs1810741 | 20 | 34109715 | CEP250 | ENSG00000126001.11 | 9.508E-8 | 0 | 66730 | gtex_brain_ba24 |
| rs1810742 | 20 | 34109718 | CEP250 | ENSG00000126001.11 | 9.498E-8 | 0 | 66733 | gtex_brain_ba24 |
| rs224396 | 20 | 34111861 | CEP250 | ENSG00000126001.11 | 5.739E-6 | 0 | 68876 | gtex_brain_ba24 |
| rs6060448 | 20 | 34112192 | CEP250 | ENSG00000126001.11 | 1.163E-7 | 0 | 69207 | gtex_brain_ba24 |
| rs224397 | 20 | 34112556 | CEP250 | ENSG00000126001.11 | 2.496E-6 | 0 | 69571 | gtex_brain_ba24 |
| rs224401 | 20 | 34114479 | CEP250 | ENSG00000126001.11 | 2.577E-6 | 0 | 71494 | gtex_brain_ba24 |
| rs201069029 | 20 | 34114479 | CEP250 | ENSG00000126001.11 | 6.992E-7 | 0 | 71494 | gtex_brain_ba24 |
| rs397737893 | 20 | 34120994 | CEP250 | ENSG00000126001.11 | 2.39E-6 | 0 | 78009 | gtex_brain_ba24 |
| rs224409 | 20 | 34124920 | CEP250 | ENSG00000126001.11 | 3.246E-7 | 0 | 81935 | gtex_brain_ba24 |
| rs224410 | 20 | 34126715 | CEP250 | ENSG00000126001.11 | 5.584E-6 | 0 | 83730 | gtex_brain_ba24 |
| rs224415 | 20 | 34135629 | CEP250 | ENSG00000126001.11 | 4.449E-7 | 0 | 92644 | gtex_brain_ba24 |
| rs224416 | 20 | 34138406 | CEP250 | ENSG00000126001.11 | 7.077E-7 | 0 | 95421 | gtex_brain_ba24 |
| rs224418 | 20 | 34142527 | CEP250 | ENSG00000126001.11 | 5.303E-7 | 0 | 99542 | gtex_brain_ba24 |
| rs224419 | 20 | 34143092 | CEP250 | ENSG00000126001.11 | 5.394E-7 | 0 | 100107 | gtex_brain_ba24 |
| rs3790136 | 20 | 34143278 | CEP250 | ENSG00000126001.11 | 2.016E-6 | 0 | 100293 | gtex_brain_ba24 |
| rs224424 | 20 | 34147998 | CEP250 | ENSG00000126001.11 | 3.074E-6 | 0 | 105013 | gtex_brain_ba24 |
| rs224427 | 20 | 34150145 | CEP250 | ENSG00000126001.11 | 3.074E-6 | 0 | 107160 | gtex_brain_ba24 |
| rs224429 | 20 | 34152018 | CEP250 | ENSG00000126001.11 | 3.078E-6 | 0 | 109033 | gtex_brain_ba24 |
| rs224430 | 20 | 34153341 | CEP250 | ENSG00000126001.11 | 3.104E-6 | 0 | 110356 | gtex_brain_ba24 |
| rs224437 | 20 | 34154371 | CEP250 | ENSG00000126001.11 | 3.104E-6 | 0 | 111386 | gtex_brain_ba24 |
| rs188878 | 20 | 34156012 | CEP250 | ENSG00000126001.11 | 3.513E-6 | 0 | 113027 | gtex_brain_ba24 |
| rs224438 | 20 | 34158394 | CEP250 | ENSG00000126001.11 | 3.1E-6 | 0 | 115409 | gtex_brain_ba24 |
| rs224440 | 20 | 34159447 | CEP250 | ENSG00000126001.11 | 3.104E-6 | 0 | 116462 | gtex_brain_ba24 |
| rs6142410 | 20 | 34161966 | CEP250 | ENSG00000126001.11 | 3.079E-6 | 0 | 118981 | gtex_brain_ba24 |
| rs6119626 | 20 | 34163526 | CEP250 | ENSG00000126001.11 | 3.082E-6 | 0 | 120541 | gtex_brain_ba24 |
| rs6088880 | 20 | 34165582 | CEP250 | ENSG00000126001.11 | 5.323E-6 | 0 | 122597 | gtex_brain_ba24 |
| rs6088881 | 20 | 34165609 | CEP250 | ENSG00000126001.11 | 2.97E-6 | 0 | 122624 | gtex_brain_ba24 |
| rs6060479 | 20 | 34165723 | CEP250 | ENSG00000126001.11 | 3.083E-6 | 0 | 122738 | gtex_brain_ba24 |
| rs224343 | 20 | 34036699 | CEP250 | ENSG00000126001.11 | 8.716E-7 | 0 | -6286 | gtex_brain_putamen_basal |
| rs224344 | 20 | 34036865 | CEP250 | ENSG00000126001.11 | 9.387E-7 | 0 | -6120 | gtex_brain_putamen_basal |
| rs224347 | 20 | 34037523 | CEP250 | ENSG00000126001.11 | 8.979E-7 | 0 | -5462 | gtex_brain_putamen_basal |
| rs6119609 | 20 | 34039394 | CEP250 | ENSG00000126001.11 | 1.148E-6 | 0 | -3591 | gtex_brain_putamen_basal |
| rs224348 | 20 | 34043946 | CEP250 | ENSG00000126001.11 | 7.154E-6 | 0 | 961 | gtex_brain_putamen_basal |
| rs224349 | 20 | 34045392 | CEP250 | ENSG00000126001.11 | 2.22E-6 | 0 | 2407 | gtex_brain_putamen_basal |
| rs224351 | 20 | 34052273 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 9288 | gtex_brain_putamen_basal |
| rs224352 | 20 | 34052604 | CEP250 | ENSG00000126001.11 | 1.019E-5 | 0 | 9619 | gtex_brain_putamen_basal |
| rs224353 | 20 | 34052676 | CEP250 | ENSG00000126001.11 | 5.043E-6 | 0 | 9691 | gtex_brain_putamen_basal |
| rs224354 | 20 | 34054609 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 11624 | gtex_brain_putamen_basal |
| rs224360 | 20 | 34059675 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 16690 | gtex_brain_putamen_basal |
| rs224361 | 20 | 34061578 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 18593 | gtex_brain_putamen_basal |
| rs224362 | 20 | 34062642 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 19657 | gtex_brain_putamen_basal |
| rs224363 | 20 | 34062710 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 19725 | gtex_brain_putamen_basal |
| rs224364 | 20 | 34063865 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 20880 | gtex_brain_putamen_basal |
| rs224366 | 20 | 34066346 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 23361 | gtex_brain_putamen_basal |
| rs224370 | 20 | 34073379 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 30394 | gtex_brain_putamen_basal |
| rs224371 | 20 | 34074831 | CEP250 | ENSG00000126001.11 | 1.065E-5 | 0 | 31846 | gtex_brain_putamen_basal |
| rs224378 | 20 | 34088764 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 45779 | gtex_brain_putamen_basal |
| rs224381 | 20 | 34097136 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 54151 | gtex_brain_putamen_basal |
| rs10359 | 20 | 34099789 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 56804 | gtex_brain_putamen_basal |
| rs224390 | 20 | 34105975 | CEP250 | ENSG00000126001.11 | 2.762E-6 | 0 | 62990 | gtex_brain_putamen_basal |
| rs224391 | 20 | 34107160 | CEP250 | ENSG00000126001.11 | 2.686E-6 | 0 | 64175 | gtex_brain_putamen_basal |
| rs224392 | 20 | 34107956 | CEP250 | ENSG00000126001.11 | 2.6E-6 | 0 | 64971 | gtex_brain_putamen_basal |
| rs224395 | 20 | 34109427 | CEP250 | ENSG00000126001.11 | 2.605E-6 | 0 | 66442 | gtex_brain_putamen_basal |
| rs1810741 | 20 | 34109715 | CEP250 | ENSG00000126001.11 | 2.322E-6 | 0 | 66730 | gtex_brain_putamen_basal |
| rs1810742 | 20 | 34109718 | CEP250 | ENSG00000126001.11 | 2.345E-6 | 0 | 66733 | gtex_brain_putamen_basal |
| rs6060448 | 20 | 34112192 | CEP250 | ENSG00000126001.11 | 5.475E-6 | 0 | 69207 | gtex_brain_putamen_basal |
| rs201069029 | 20 | 34114479 | CEP250 | ENSG00000126001.11 | 9.903E-6 | 0 | 71494 | gtex_brain_putamen_basal |
| rs224409 | 20 | 34124920 | CEP250 | ENSG00000126001.11 | 7.564E-6 | 0 | 81935 | gtex_brain_putamen_basal |
| rs224410 | 20 | 34126715 | CEP250 | ENSG00000126001.11 | 5.964E-6 | 0 | 83730 | gtex_brain_putamen_basal |
| rs224415 | 20 | 34135629 | CEP250 | ENSG00000126001.11 | 4.504E-7 | 0 | 92644 | gtex_brain_putamen_basal |
| rs224416 | 20 | 34138406 | CEP250 | ENSG00000126001.11 | 6.784E-7 | 0 | 95421 | gtex_brain_putamen_basal |
| rs224418 | 20 | 34142527 | CEP250 | ENSG00000126001.11 | 1.87E-7 | 0 | 99542 | gtex_brain_putamen_basal |
| rs224419 | 20 | 34143092 | CEP250 | ENSG00000126001.11 | 8.309E-7 | 0 | 100107 | gtex_brain_putamen_basal |
| rs224424 | 20 | 34147998 | CEP250 | ENSG00000126001.11 | 3.809E-7 | 0 | 105013 | gtex_brain_putamen_basal |
| rs224427 | 20 | 34150145 | CEP250 | ENSG00000126001.11 | 1.504E-6 | 0 | 107160 | gtex_brain_putamen_basal |
| rs224429 | 20 | 34152018 | CEP250 | ENSG00000126001.11 | 3.847E-7 | 0 | 109033 | gtex_brain_putamen_basal |
| rs224430 | 20 | 34153341 | CEP250 | ENSG00000126001.11 | 1.543E-6 | 0 | 110356 | gtex_brain_putamen_basal |
| rs224437 | 20 | 34154371 | CEP250 | ENSG00000126001.11 | 1.582E-6 | 0 | 111386 | gtex_brain_putamen_basal |
| rs188878 | 20 | 34156012 | CEP250 | ENSG00000126001.11 | 1.4E-7 | 0 | 113027 | gtex_brain_putamen_basal |
| rs224438 | 20 | 34158394 | CEP250 | ENSG00000126001.11 | 4.439E-7 | 0 | 115409 | gtex_brain_putamen_basal |
| rs224440 | 20 | 34159447 | CEP250 | ENSG00000126001.11 | 4.642E-7 | 0 | 116462 | gtex_brain_putamen_basal |
| rs6142410 | 20 | 34161966 | CEP250 | ENSG00000126001.11 | 6.338E-7 | 0 | 118981 | gtex_brain_putamen_basal |
| rs6119626 | 20 | 34163526 | CEP250 | ENSG00000126001.11 | 6.519E-6 | 0 | 120541 | gtex_brain_putamen_basal |
| rs6088880 | 20 | 34165582 | CEP250 | ENSG00000126001.11 | 1.577E-6 | 0 | 122597 | gtex_brain_putamen_basal |
| rs6088881 | 20 | 34165609 | CEP250 | ENSG00000126001.11 | 8.391E-7 | 0 | 122624 | gtex_brain_putamen_basal |
| rs6060479 | 20 | 34165723 | CEP250 | ENSG00000126001.11 | 6.018E-6 | 0 | 122738 | gtex_brain_putamen_basal |
| rs61544093 | 20 | 34556287 | CEP250 | ENSG00000126001.11 | 1.397E-5 | 0 | 513302 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| REACTOME CELL CYCLE | 421 | 253 | All SZGR 2.0 genes in this pathway |
| REACTOME CELL CYCLE MITOTIC | 325 | 185 | All SZGR 2.0 genes in this pathway |
| REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | 66 | 43 | All SZGR 2.0 genes in this pathway |
| REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES | 59 | 38 | All SZGR 2.0 genes in this pathway |
| REACTOME MITOTIC G2 G2 M PHASES | 81 | 50 | All SZGR 2.0 genes in this pathway |
| PARENT MTOR SIGNALING UP | 567 | 375 | All SZGR 2.0 genes in this pathway |
| NUYTTEN EZH2 TARGETS UP | 1037 | 673 | All SZGR 2.0 genes in this pathway |
| NIKOLSKY BREAST CANCER 20Q11 AMPLICON | 31 | 18 | All SZGR 2.0 genes in this pathway |
| ASTON MAJOR DEPRESSIVE DISORDER UP | 49 | 36 | All SZGR 2.0 genes in this pathway |
| BROWNE HCMV INFECTION 18HR DN | 178 | 121 | All SZGR 2.0 genes in this pathway |
| OUILLETTE CLL 13Q14 DELETION UP | 74 | 40 | All SZGR 2.0 genes in this pathway |
| BOYLAN MULTIPLE MYELOMA D CLUSTER DN | 40 | 26 | All SZGR 2.0 genes in this pathway |
| BOYLAN MULTIPLE MYELOMA C D DN | 252 | 155 | All SZGR 2.0 genes in this pathway |
| WAKABAYASHI ADIPOGENESIS PPARG BOUND 8D | 658 | 397 | All SZGR 2.0 genes in this pathway |
| KRIEG HYPOXIA NOT VIA KDM3A | 770 | 480 | All SZGR 2.0 genes in this pathway |