Gene Page: SPATA33
Summary ?
| GeneID | 124045 |
| Symbol | SPATA33 |
| Synonyms | C16orf55 |
| Description | spermatogenesis associated 33 |
| Reference | MIM:615409|HGNC:HGNC:26463|Ensembl:ENSG00000167523|HPRD:08105|Vega:OTTHUMG00000138048 |
| Gene type | protein-coding |
| Map location | 16q24.3 |
| eGene | Cerebellum |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:GWAScat | Genome-wide Association Studies | This data set includes 560 SNPs associated with schizophrenia. A total of 486 genes were mapped to these SNPs within 50kb. | |
| CV:GWASdb | Genome-wide Association Studies | GWASdb records for schizophrenia | |
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs226963 | chr6 | 3724120 | C16orf55 | 124045 | 0.05 | trans | ||
| rs3790050 | chr14 | 94421666 | C16orf55 | 124045 | 0.09 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.