Gene Page: YJEFN3
Summary ?
| GeneID | 374887 |
| Symbol | YJEFN3 |
| Synonyms | - |
| Description | YjeF N-terminal domain containing 3 |
| Reference | HGNC:HGNC:24785|Ensembl:ENSG00000250067|HPRD:13498|Vega:OTTHUMG00000162251 |
| Gene type | protein-coding |
| Map location | 19p13.11 |
| Pascal p-value | 8.899E-8 |
| Sherlock p-value | 0.207 |
| Fetal beta | -2.001 |
| eGene | Myers' cis & trans |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| LK:YES | Genome-wide Association Study | This data set included 99 genes mapped to the 22 regions. The 24 leading SNPs were also included in CV:Ripke_2013 |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs7321205 | chr13 | 89949815 | YJEFN3 | 374887 | 0.06 | trans | ||
| rs2456047 | chr15 | 76484829 | YJEFN3 | 374887 | 0.19 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.