Gene Page: SLC22A18AS
Summary ?
| GeneID | 5003 |
| Symbol | SLC22A18AS |
| Synonyms | BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B |
| Description | solute carrier family 22 member 18 antisense |
| Reference | MIM:603240|HGNC:HGNC:10965|HPRD:09127| |
| Gene type | protein-coding |
| Map location | 11p15.5 |
| Pascal p-value | 0.006 |
| Fetal beta | -1.705 |
| DMG | 2 (# studies) |
| eGene | Cortex Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| DMG:Jaffe_2016 | Genome-wide DNA methylation analysis | This dataset includes 2,104 probes/CpGs associated with SZ patients (n=108) compared to 136 controls at Bonferroni-adjusted P < 0.05. | 2 |
| DMG:Montano_2016 | Genome-wide DNA methylation analysis | This dataset includes 172 replicated associations between CpGs with schizophrenia. | 2 |
Section I. Genetics and epigenetics annotation
Differentially methylated gene
| Probe | Chromosome | Position | Nearest gene | P (dis) | Beta (dis) | FDR (dis) | Study |
|---|---|---|---|---|---|---|---|
| cg21019522 | 11 | 2920789 | SLC22A18AS | 2.27E-4 | -0.005 | 0.164 | DMG:Montano_2016 |
| cg17992161 | 11 | 2923525 | SLC22A18AS | 1.43E-8 | 0.007 | 5.53E-6 | DMG:Jaffe_2016 |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.