Gene Page: PCBP3
Summary ?
| GeneID | 54039 |
| Symbol | PCBP3 |
| Synonyms | ALPHA-CP3 |
| Description | poly(rC) binding protein 3 |
| Reference | MIM:608502|HGNC:HGNC:8651|Ensembl:ENSG00000183570|HPRD:10534|Vega:OTTHUMG00000090399 |
| Gene type | protein-coding |
| Map location | 21q22.3 |
| Pascal p-value | 0.005 |
| Sherlock p-value | 0.568 |
| eGene | Myers' cis & trans |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs2502827 | chr1 | 176044216 | PCBP3 | 54039 | 0.06 | trans | ||
| rs17572651 | chr1 | 218943612 | PCBP3 | 54039 | 0.19 | trans | ||
| rs16829545 | chr2 | 151977407 | PCBP3 | 54039 | 4.07E-14 | trans | ||
| rs3845734 | chr2 | 171125572 | PCBP3 | 54039 | 0 | trans | ||
| rs7584986 | chr2 | 184111432 | PCBP3 | 54039 | 6.706E-5 | trans | ||
| rs17762315 | chr5 | 76807576 | PCBP3 | 54039 | 0 | trans | ||
| rs2393316 | chr10 | 59333070 | PCBP3 | 54039 | 0.12 | trans | ||
| rs16955618 | chr15 | 29937543 | PCBP3 | 54039 | 2.136E-21 | trans | ||
| rs1041786 | chr21 | 22617710 | PCBP3 | 54039 | 2.852E-4 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| DODD NASOPHARYNGEAL CARCINOMA UP | 1821 | 933 | All SZGR 2.0 genes in this pathway |
| NIKOLSKY BREAST CANCER 21Q22 AMPLICON | 16 | 11 | All SZGR 2.0 genes in this pathway |
| IIZUKA LIVER CANCER PROGRESSION L0 L1 UP | 17 | 12 | All SZGR 2.0 genes in this pathway |
| PENG LEUCINE DEPRIVATION UP | 142 | 93 | All SZGR 2.0 genes in this pathway |
| ZHANG GATA6 TARGETS DN | 64 | 46 | All SZGR 2.0 genes in this pathway |
| VALK AML CLUSTER 12 | 30 | 20 | All SZGR 2.0 genes in this pathway |
| TORCHIA TARGETS OF EWSR1 FLI1 FUSION UP | 271 | 165 | All SZGR 2.0 genes in this pathway |
| ZWANG TRANSIENTLY UP BY 2ND EGF PULSE ONLY | 1725 | 838 | All SZGR 2.0 genes in this pathway |