Gene Page: LY6K
Summary ?
| GeneID | 54742 |
| Symbol | LY6K |
| Synonyms | CT97|HSJ001348|URLC10|ly-6K |
| Description | lymphocyte antigen 6 complex, locus K |
| Reference | MIM:615093|HGNC:HGNC:24225|HPRD:17457| |
| Gene type | protein-coding |
| Map location | 8q24.3 |
| Pascal p-value | 3.301E-4 |
| eGene | Anterior cingulate cortex BA24 Caudate basal ganglia Cerebellar Hemisphere Cerebellum Cortex Frontal Cortex BA9 Hippocampus Hypothalamus Nucleus accumbens basal ganglia Putamen basal ganglia |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs2976384 | 8 | 143752994 | LY6K | ENSG00000160886.9 | 5.517E-7 | 0 | -28535 | gtex_brain_ba24 |
| rs2920288 | 8 | 143753289 | LY6K | ENSG00000160886.9 | 3.854E-8 | 0 | -28240 | gtex_brain_ba24 |
| rs2920286 | 8 | 143754728 | LY6K | ENSG00000160886.9 | 6.871E-7 | 0 | -26801 | gtex_brain_ba24 |
| rs2978977 | 8 | 143755720 | LY6K | ENSG00000160886.9 | 1.823E-6 | 0 | -25809 | gtex_brain_ba24 |
| rs2920285 | 8 | 143756218 | LY6K | ENSG00000160886.9 | 1.142E-6 | 0 | -25311 | gtex_brain_ba24 |
| rs2978978 | 8 | 143756530 | LY6K | ENSG00000160886.9 | 1.21E-6 | 0 | -24999 | gtex_brain_ba24 |
| rs2920284 | 8 | 143756919 | LY6K | ENSG00000160886.9 | 1.304E-6 | 0 | -24610 | gtex_brain_ba24 |
| rs2920283 | 8 | 143757037 | LY6K | ENSG00000160886.9 | 1.343E-6 | 0 | -24492 | gtex_brain_ba24 |
| rs2978979 | 8 | 143757286 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -24243 | gtex_brain_ba24 |
| rs2976386 | 8 | 143757409 | LY6K | ENSG00000160886.9 | 1.878E-7 | 0 | -24120 | gtex_brain_ba24 |
| rs2978980 | 8 | 143757708 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -23821 | gtex_brain_ba24 |
| rs2920282 | 8 | 143757763 | LY6K | ENSG00000160886.9 | 1.878E-7 | 0 | -23766 | gtex_brain_ba24 |
| rs2978981 | 8 | 143759137 | LY6K | ENSG00000160886.9 | 1.86E-7 | 0 | -22392 | gtex_brain_ba24 |
| rs2976387 | 8 | 143759364 | LY6K | ENSG00000160886.9 | 1.957E-7 | 0 | -22165 | gtex_brain_ba24 |
| rs11786721 | 8 | 143760179 | LY6K | ENSG00000160886.9 | 1.048E-6 | 0 | -21350 | gtex_brain_ba24 |
| rs2976388 | 8 | 143760256 | LY6K | ENSG00000160886.9 | 1.95E-7 | 0 | -21273 | gtex_brain_ba24 |
| rs60815595 | 8 | 143760366 | LY6K | ENSG00000160886.9 | 2.026E-7 | 0 | -21163 | gtex_brain_ba24 |
| rs2976389 | 8 | 143760421 | LY6K | ENSG00000160886.9 | 1.537E-7 | 0 | -21108 | gtex_brain_ba24 |
| rs2920281 | 8 | 143760444 | LY6K | ENSG00000160886.9 | 1.942E-7 | 0 | -21085 | gtex_brain_ba24 |
| rs372118941 | 8 | 143760836 | LY6K | ENSG00000160886.9 | 9.407E-7 | 0 | -20693 | gtex_brain_ba24 |
| rs2920280 | 8 | 143761144 | LY6K | ENSG00000160886.9 | 1.959E-7 | 0 | -20385 | gtex_brain_ba24 |
| rs2294008 | 8 | 143761931 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -19598 | gtex_brain_ba24 |
| rs2920279 | 8 | 143762135 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -19394 | gtex_brain_ba24 |
| rs2294010 | 8 | 143762430 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -19099 | gtex_brain_ba24 |
| rs2976391 | 8 | 143762724 | LY6K | ENSG00000160886.9 | 3.051E-8 | 0 | -18805 | gtex_brain_ba24 |
| rs2976392 | 8 | 143762932 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -18597 | gtex_brain_ba24 |
| rs2920298 | 8 | 143763043 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -18486 | gtex_brain_ba24 |
| rs2920297 | 8 | 143763083 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -18446 | gtex_brain_ba24 |
| rs2920296 | 8 | 143763109 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -18420 | gtex_brain_ba24 |
| rs72264938 | 8 | 143763259 | LY6K | ENSG00000160886.9 | 1.832E-7 | 0 | -18270 | gtex_brain_ba24 |
| rs2978982 | 8 | 143763490 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -18039 | gtex_brain_ba24 |
| rs1045531 | 8 | 143763547 | LY6K | ENSG00000160886.9 | 1.428E-7 | 0 | -17982 | gtex_brain_ba24 |
| rs2976393 | 8 | 143763618 | LY6K | ENSG00000160886.9 | 5.191E-7 | 0 | -17911 | gtex_brain_ba24 |
| rs2976394 | 8 | 143763622 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -17907 | gtex_brain_ba24 |
| rs10216533 | 8 | 143763690 | LY6K | ENSG00000160886.9 | 2.945E-7 | 0 | -17839 | gtex_brain_ba24 |
| rs2976395 | 8 | 143763750 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -17779 | gtex_brain_ba24 |
| rs1045547 | 8 | 143763757 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -17772 | gtex_brain_ba24 |
| rs1045574 | 8 | 143763958 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -17571 | gtex_brain_ba24 |
| rs2976396 | 8 | 143764001 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -17528 | gtex_brain_ba24 |
| rs1045605 | 8 | 143764101 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -17428 | gtex_brain_ba24 |
| rs2976397 | 8 | 143764613 | LY6K | ENSG00000160886.9 | 2.684E-7 | 0 | -16916 | gtex_brain_ba24 |
| rs2976398 | 8 | 143764879 | LY6K | ENSG00000160886.9 | 2.025E-7 | 0 | -16650 | gtex_brain_ba24 |
| rs2920295 | 8 | 143764937 | LY6K | ENSG00000160886.9 | 2.164E-7 | 0 | -16592 | gtex_brain_ba24 |
| rs2920294 | 8 | 143765326 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -16203 | gtex_brain_ba24 |
| rs2920293 | 8 | 143765414 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -16115 | gtex_brain_ba24 |
| rs2920292 | 8 | 143765699 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -15830 | gtex_brain_ba24 |
| rs2978983 | 8 | 143765842 | LY6K | ENSG00000160886.9 | 3.051E-8 | 0 | -15687 | gtex_brain_ba24 |
| rs2585183 | 8 | 143766059 | LY6K | ENSG00000160886.9 | 1.97E-7 | 0 | -15470 | gtex_brain_ba24 |
| rs74895785 | 8 | 143769242 | LY6K | ENSG00000160886.9 | 2.961E-8 | 0 | -12287 | gtex_brain_ba24 |
| rs2572910 | 8 | 143770135 | LY6K | ENSG00000160886.9 | 1.87E-7 | 0 | -11394 | gtex_brain_ba24 |
| rs5895729 | 8 | 143773354 | LY6K | ENSG00000160886.9 | 8.872E-7 | 0 | -8175 | gtex_brain_ba24 |
| rs2585179 | 8 | 143774193 | LY6K | ENSG00000160886.9 | 1.882E-7 | 0 | -7336 | gtex_brain_ba24 |
| rs1836633 | 8 | 143774592 | LY6K | ENSG00000160886.9 | 3.042E-8 | 0 | -6937 | gtex_brain_ba24 |
| rs2717562 | 8 | 143776668 | LY6K | ENSG00000160886.9 | 1.564E-7 | 0 | -4861 | gtex_brain_ba24 |
| rs199913273 | 8 | 143778378 | LY6K | ENSG00000160886.9 | 1.09E-7 | 0 | -3151 | gtex_brain_ba24 |
| rs2585176 | 8 | 143778381 | LY6K | ENSG00000160886.9 | 1.138E-7 | 0 | -3148 | gtex_brain_ba24 |
| rs370406445 | 8 | 143779622 | LY6K | ENSG00000160886.9 | 1.342E-7 | 0 | -1907 | gtex_brain_ba24 |
| rs1435453 | 8 | 143780775 | LY6K | ENSG00000160886.9 | 3.047E-8 | 0 | -754 | gtex_brain_ba24 |
| rs2585175 | 8 | 143781289 | LY6K | ENSG00000160886.9 | 8.336E-9 | 0 | -240 | gtex_brain_ba24 |
| rs1048831 | 8 | 143781858 | LY6K | ENSG00000160886.9 | 2.08E-8 | 0 | 329 | gtex_brain_ba24 |
| rs2585174 | 8 | 143782044 | LY6K | ENSG00000160886.9 | 9.532E-9 | 0 | 515 | gtex_brain_ba24 |
| rs2572898 | 8 | 143782274 | LY6K | ENSG00000160886.9 | 1.182E-8 | 0 | 745 | gtex_brain_ba24 |
| rs13272904 | 8 | 143782614 | LY6K | ENSG00000160886.9 | 3.493E-9 | 0 | 1085 | gtex_brain_ba24 |
| rs2585154 | 8 | 143783485 | LY6K | ENSG00000160886.9 | 3.955E-9 | 0 | 1956 | gtex_brain_ba24 |
| rs2244163 | 8 | 143784500 | LY6K | ENSG00000160886.9 | 4.804E-9 | 0 | 2971 | gtex_brain_ba24 |
| rs2244152 | 8 | 143784885 | LY6K | ENSG00000160886.9 | 8.32E-9 | 0 | 3356 | gtex_brain_ba24 |
| rs2585153 | 8 | 143785345 | LY6K | ENSG00000160886.9 | 8.32E-9 | 0 | 3816 | gtex_brain_ba24 |
| rs2572899 | 8 | 143785549 | LY6K | ENSG00000160886.9 | 8.32E-9 | 0 | 4020 | gtex_brain_ba24 |
| rs2164308 | 8 | 143785659 | LY6K | ENSG00000160886.9 | 8.32E-9 | 0 | 4130 | gtex_brain_ba24 |
| rs2585152 | 8 | 143786214 | LY6K | ENSG00000160886.9 | 8.32E-9 | 0 | 4685 | gtex_brain_ba24 |
| rs2082801 | 8 | 143786461 | LY6K | ENSG00000160886.9 | 4.804E-9 | 0 | 4932 | gtex_brain_ba24 |
| rs2717550 | 8 | 143787808 | LY6K | ENSG00000160886.9 | 8.32E-9 | 0 | 6279 | gtex_brain_ba24 |
| rs1469811 | 8 | 143787999 | LY6K | ENSG00000160886.9 | 8.32E-9 | 0 | 6470 | gtex_brain_ba24 |
| rs2164307 | 8 | 143788831 | LY6K | ENSG00000160886.9 | 4.832E-9 | 0 | 7302 | gtex_brain_ba24 |
| rs1529865 | 8 | 143789171 | LY6K | ENSG00000160886.9 | 4.804E-9 | 0 | 7642 | gtex_brain_ba24 |
| rs71514095 | 8 | 143789531 | LY6K | ENSG00000160886.9 | 1.188E-8 | 0 | 8002 | gtex_brain_ba24 |
| rs1560986 | 8 | 143789775 | LY6K | ENSG00000160886.9 | 4.498E-9 | 0 | 8246 | gtex_brain_ba24 |
| rs2263092 | 8 | 143789966 | LY6K | ENSG00000160886.9 | 8.32E-9 | 0 | 8437 | gtex_brain_ba24 |
| rs1594999 | 8 | 143790574 | LY6K | ENSG00000160886.9 | 8.32E-9 | 0 | 9045 | gtex_brain_ba24 |
| rs2376491 | 8 | 143790934 | LY6K | ENSG00000160886.9 | 4.804E-9 | 0 | 9405 | gtex_brain_ba24 |
| rs2717552 | 8 | 143791300 | LY6K | ENSG00000160886.9 | 8.323E-9 | 0 | 9771 | gtex_brain_ba24 |
| rs2585151 | 8 | 143791305 | LY6K | ENSG00000160886.9 | 4.804E-9 | 0 | 9776 | gtex_brain_ba24 |
| rs2572902 | 8 | 143791387 | LY6K | ENSG00000160886.9 | 8.323E-9 | 0 | 9858 | gtex_brain_ba24 |
| rs2572903 | 8 | 143791406 | LY6K | ENSG00000160886.9 | 6.725E-9 | 0 | 9877 | gtex_brain_ba24 |
| rs2572904 | 8 | 143792193 | LY6K | ENSG00000160886.9 | 5.471E-9 | 0 | 10664 | gtex_brain_ba24 |
| rs4736373 | 8 | 143792357 | LY6K | ENSG00000160886.9 | 3.691E-7 | 0 | 10828 | gtex_brain_ba24 |
| rs2585150 | 8 | 143792669 | LY6K | ENSG00000160886.9 | 8.336E-9 | 0 | 11140 | gtex_brain_ba24 |
| rs2585149 | 8 | 143793320 | LY6K | ENSG00000160886.9 | 8.339E-9 | 0 | 11791 | gtex_brain_ba24 |
| rs386414249 | 8 | 143794037 | LY6K | ENSG00000160886.9 | 4.888E-9 | 0 | 12508 | gtex_brain_ba24 |
| rs2585148 | 8 | 143796193 | LY6K | ENSG00000160886.9 | 4.872E-9 | 0 | 14664 | gtex_brain_ba24 |
| rs2572905 | 8 | 143797104 | LY6K | ENSG00000160886.9 | 4.934E-9 | 0 | 15575 | gtex_brain_ba24 |
| rs2572906 | 8 | 143798269 | LY6K | ENSG00000160886.9 | 5.013E-9 | 0 | 16740 | gtex_brain_ba24 |
| rs2585146 | 8 | 143798641 | LY6K | ENSG00000160886.9 | 3.701E-7 | 0 | 17112 | gtex_brain_ba24 |
| rs2585145 | 8 | 143799457 | LY6K | ENSG00000160886.9 | 1.065E-8 | 0 | 17928 | gtex_brain_ba24 |
| rs2717606 | 8 | 143799496 | LY6K | ENSG00000160886.9 | 1.066E-8 | 0 | 17967 | gtex_brain_ba24 |
| rs376247721 | 8 | 143799666 | LY6K | ENSG00000160886.9 | 8.278E-8 | 0 | 18137 | gtex_brain_ba24 |
| rs2585144 | 8 | 143800269 | LY6K | ENSG00000160886.9 | 1.068E-8 | 0 | 18740 | gtex_brain_ba24 |
| rs2717605 | 8 | 143801015 | LY6K | ENSG00000160886.9 | 4.442E-9 | 0 | 19486 | gtex_brain_ba24 |
| rs2572907 | 8 | 143801938 | LY6K | ENSG00000160886.9 | 5.343E-9 | 0 | 20409 | gtex_brain_ba24 |
| rs6998746 | 8 | 143802456 | LY6K | ENSG00000160886.9 | 3.711E-7 | 0 | 20927 | gtex_brain_ba24 |
| rs2572908 | 8 | 143802636 | LY6K | ENSG00000160886.9 | 5.355E-9 | 0 | 21107 | gtex_brain_ba24 |
| rs2717603 | 8 | 143803193 | LY6K | ENSG00000160886.9 | 1.076E-8 | 0 | 21664 | gtex_brain_ba24 |
| rs13250661 | 8 | 143804134 | LY6K | ENSG00000160886.9 | 3.711E-7 | 0 | 22605 | gtex_brain_ba24 |
| rs2717602 | 8 | 143805683 | LY6K | ENSG00000160886.9 | 3.642E-9 | 0 | 24154 | gtex_brain_ba24 |
| rs60429799 | 8 | 143806069 | LY6K | ENSG00000160886.9 | 9.662E-9 | 0 | 24540 | gtex_brain_ba24 |
| rs2585141 | 8 | 143806343 | LY6K | ENSG00000160886.9 | 3.492E-7 | 0 | 24814 | gtex_brain_ba24 |
| rs2572909 | 8 | 143806464 | LY6K | ENSG00000160886.9 | 9.321E-9 | 0 | 24935 | gtex_brain_ba24 |
| rs2585140 | 8 | 143806896 | LY6K | ENSG00000160886.9 | 8.973E-9 | 0 | 25367 | gtex_brain_ba24 |
| rs2717601 | 8 | 143807924 | LY6K | ENSG00000160886.9 | 9.546E-9 | 0 | 26395 | gtex_brain_ba24 |
| rs2585139 | 8 | 143808175 | LY6K | ENSG00000160886.9 | 2.582E-9 | 0 | 26646 | gtex_brain_ba24 |
| rs2257796 | 8 | 143808667 | LY6K | ENSG00000160886.9 | 2.951E-9 | 0 | 27138 | gtex_brain_ba24 |
| rs2585138 | 8 | 143808951 | LY6K | ENSG00000160886.9 | 7.235E-9 | 0 | 27422 | gtex_brain_ba24 |
| rs2257840 | 8 | 143809193 | LY6K | ENSG00000160886.9 | 5.284E-9 | 0 | 27664 | gtex_brain_ba24 |
| rs2585136 | 8 | 143812141 | LY6K | ENSG00000160886.9 | 3.979E-9 | 0 | 30612 | gtex_brain_ba24 |
| rs2717600 | 8 | 143813988 | LY6K | ENSG00000160886.9 | 3.713E-9 | 0 | 32459 | gtex_brain_ba24 |
| rs2585135 | 8 | 143814193 | LY6K | ENSG00000160886.9 | 2.924E-9 | 0 | 32664 | gtex_brain_ba24 |
| rs10087426 | 8 | 143814554 | LY6K | ENSG00000160886.9 | 4.169E-7 | 0 | 33025 | gtex_brain_ba24 |
| rs11785290 | 8 | 143814849 | LY6K | ENSG00000160886.9 | 3.964E-7 | 0 | 33320 | gtex_brain_ba24 |
| rs10624245 | 8 | 143815697 | LY6K | ENSG00000160886.9 | 2.299E-9 | 0 | 34168 | gtex_brain_ba24 |
| rs3736011 | 8 | 143817789 | LY6K | ENSG00000160886.9 | 7.219E-7 | 0 | 36260 | gtex_brain_ba24 |
| rs7828042 | 8 | 143819383 | LY6K | ENSG00000160886.9 | 6.904E-7 | 0 | 37854 | gtex_brain_ba24 |
| rs10110970 | 8 | 143820410 | LY6K | ENSG00000160886.9 | 6.904E-7 | 0 | 38881 | gtex_brain_ba24 |
| rs4736322 | 8 | 143822208 | LY6K | ENSG00000160886.9 | 7.497E-7 | 0 | 40679 | gtex_brain_ba24 |
| rs13254346 | 8 | 143823863 | LY6K | ENSG00000160886.9 | 6.904E-7 | 0 | 42334 | gtex_brain_ba24 |
| rs3758082 | 8 | 143824483 | LY6K | ENSG00000160886.9 | 6.904E-7 | 0 | 42954 | gtex_brain_ba24 |
| rs7010768 | 8 | 143825951 | LY6K | ENSG00000160886.9 | 2.554E-8 | 0 | 44422 | gtex_brain_ba24 |
| rs141156042 | 8 | 143825981 | LY6K | ENSG00000160886.9 | 9.824E-7 | 0 | 44452 | gtex_brain_ba24 |
| rs4736301 | 8 | 143829499 | LY6K | ENSG00000160886.9 | 6.742E-7 | 0 | 47970 | gtex_brain_ba24 |
| rs4736324 | 8 | 143830462 | LY6K | ENSG00000160886.9 | 6.904E-7 | 0 | 48933 | gtex_brain_ba24 |
| rs2976384 | 8 | 143752994 | LY6K | ENSG00000160886.9 | 5.047E-7 | 0 | -28535 | gtex_brain_putamen_basal |
| rs2920288 | 8 | 143753289 | LY6K | ENSG00000160886.9 | 4.107E-8 | 0 | -28240 | gtex_brain_putamen_basal |
| rs2920286 | 8 | 143754728 | LY6K | ENSG00000160886.9 | 9.263E-8 | 0 | -26801 | gtex_brain_putamen_basal |
| rs2978977 | 8 | 143755720 | LY6K | ENSG00000160886.9 | 3.569E-9 | 0 | -25809 | gtex_brain_putamen_basal |
| rs2920285 | 8 | 143756218 | LY6K | ENSG00000160886.9 | 1.874E-6 | 0 | -25311 | gtex_brain_putamen_basal |
| rs2978978 | 8 | 143756530 | LY6K | ENSG00000160886.9 | 2.048E-6 | 0 | -24999 | gtex_brain_putamen_basal |
| rs201666438 | 8 | 143756891 | LY6K | ENSG00000160886.9 | 1.319E-6 | 0 | -24638 | gtex_brain_putamen_basal |
| rs13256647 | 8 | 143756895 | LY6K | ENSG00000160886.9 | 2.075E-6 | 0 | -24634 | gtex_brain_putamen_basal |
| rs2920284 | 8 | 143756919 | LY6K | ENSG00000160886.9 | 2.25E-6 | 0 | -24610 | gtex_brain_putamen_basal |
| rs2976386 | 8 | 143757409 | LY6K | ENSG00000160886.9 | 3.56E-7 | 0 | -24120 | gtex_brain_putamen_basal |
| rs34335167 | 8 | 143757564 | LY6K | ENSG00000160886.9 | 1.639E-6 | 0 | -23965 | gtex_brain_putamen_basal |
| rs2978981 | 8 | 143759137 | LY6K | ENSG00000160886.9 | 3.88E-7 | 0 | -22392 | gtex_brain_putamen_basal |
| rs2976387 | 8 | 143759364 | LY6K | ENSG00000160886.9 | 4.941E-9 | 0 | -22165 | gtex_brain_putamen_basal |
| rs11786721 | 8 | 143760179 | LY6K | ENSG00000160886.9 | 1.57E-8 | 0 | -21350 | gtex_brain_putamen_basal |
| rs2976388 | 8 | 143760256 | LY6K | ENSG00000160886.9 | 6.903E-8 | 0 | -21273 | gtex_brain_putamen_basal |
| rs60815595 | 8 | 143760366 | LY6K | ENSG00000160886.9 | 2.271E-6 | 0 | -21163 | gtex_brain_putamen_basal |
| rs2920281 | 8 | 143760444 | LY6K | ENSG00000160886.9 | 8.846E-9 | 0 | -21085 | gtex_brain_putamen_basal |
| rs372118941 | 8 | 143760836 | LY6K | ENSG00000160886.9 | 1.531E-6 | 0 | -20693 | gtex_brain_putamen_basal |
| rs2920280 | 8 | 143761144 | LY6K | ENSG00000160886.9 | 4.863E-9 | 0 | -20385 | gtex_brain_putamen_basal |
| rs13262164 | 8 | 143761172 | LY6K | ENSG00000160886.9 | 1.862E-6 | 0 | -20357 | gtex_brain_putamen_basal |
| rs2976391 | 8 | 143762724 | LY6K | ENSG00000160886.9 | 1.002E-7 | 0 | -18805 | gtex_brain_putamen_basal |
| rs1045531 | 8 | 143763547 | LY6K | ENSG00000160886.9 | 1.493E-6 | 0 | -17982 | gtex_brain_putamen_basal |
| rs2976397 | 8 | 143764613 | LY6K | ENSG00000160886.9 | 3.151E-9 | 0 | -16916 | gtex_brain_putamen_basal |
| rs2920295 | 8 | 143764937 | LY6K | ENSG00000160886.9 | 1.588E-6 | 0 | -16592 | gtex_brain_putamen_basal |
| rs2978983 | 8 | 143765842 | LY6K | ENSG00000160886.9 | 9.946E-8 | 0 | -15687 | gtex_brain_putamen_basal |
| rs12155758 | 8 | 143765885 | LY6K | ENSG00000160886.9 | 1.969E-6 | 0 | -15644 | gtex_brain_putamen_basal |
| rs2585183 | 8 | 143766059 | LY6K | ENSG00000160886.9 | 4.669E-9 | 0 | -15470 | gtex_brain_putamen_basal |
| rs74895785 | 8 | 143769242 | LY6K | ENSG00000160886.9 | 1.419E-7 | 0 | -12287 | gtex_brain_putamen_basal |
| rs2717609 | 8 | 143769252 | LY6K | ENSG00000160886.9 | 1.048E-6 | 0 | -12277 | gtex_brain_putamen_basal |
| rs55924374 | 8 | 143772655 | LY6K | ENSG00000160886.9 | 2.061E-6 | 0 | -8874 | gtex_brain_putamen_basal |
| rs4736371 | 8 | 143773166 | LY6K | ENSG00000160886.9 | 1.25E-6 | 0 | -8363 | gtex_brain_putamen_basal |
| rs1836633 | 8 | 143774592 | LY6K | ENSG00000160886.9 | 9.694E-8 | 0 | -6937 | gtex_brain_putamen_basal |
| rs199913273 | 8 | 143778378 | LY6K | ENSG00000160886.9 | 1.024E-9 | 0 | -3151 | gtex_brain_putamen_basal |
| rs2585176 | 8 | 143778381 | LY6K | ENSG00000160886.9 | 8.029E-10 | 0 | -3148 | gtex_brain_putamen_basal |
| rs370406445 | 8 | 143779622 | LY6K | ENSG00000160886.9 | 7.133E-8 | 0 | -1907 | gtex_brain_putamen_basal |
| rs1435453 | 8 | 143780775 | LY6K | ENSG00000160886.9 | 9.55E-8 | 0 | -754 | gtex_brain_putamen_basal |
| rs12548797 | 8 | 143781115 | LY6K | ENSG00000160886.9 | 2.01E-6 | 0 | -414 | gtex_brain_putamen_basal |
| rs2585175 | 8 | 143781289 | LY6K | ENSG00000160886.9 | 7.403E-10 | 0 | -240 | gtex_brain_putamen_basal |
| rs1048831 | 8 | 143781858 | LY6K | ENSG00000160886.9 | 7.383E-10 | 0 | 329 | gtex_brain_putamen_basal |
| rs2585174 | 8 | 143782044 | LY6K | ENSG00000160886.9 | 6.938E-12 | 0 | 515 | gtex_brain_putamen_basal |
| rs2572898 | 8 | 143782274 | LY6K | ENSG00000160886.9 | 3.818E-7 | 0 | 745 | gtex_brain_putamen_basal |
| rs13272904 | 8 | 143782614 | LY6K | ENSG00000160886.9 | 2.484E-11 | 0 | 1085 | gtex_brain_putamen_basal |
| rs2585154 | 8 | 143783485 | LY6K | ENSG00000160886.9 | 6.372E-8 | 0 | 1956 | gtex_brain_putamen_basal |
| rs2244163 | 8 | 143784500 | LY6K | ENSG00000160886.9 | 4.858E-8 | 0 | 2971 | gtex_brain_putamen_basal |
| rs2244152 | 8 | 143784885 | LY6K | ENSG00000160886.9 | 6.551E-10 | 0 | 3356 | gtex_brain_putamen_basal |
| rs2585153 | 8 | 143785345 | LY6K | ENSG00000160886.9 | 6.551E-10 | 0 | 3816 | gtex_brain_putamen_basal |
| rs2572899 | 8 | 143785549 | LY6K | ENSG00000160886.9 | 3.213E-11 | 0 | 4020 | gtex_brain_putamen_basal |
| rs2164308 | 8 | 143785659 | LY6K | ENSG00000160886.9 | 3.213E-11 | 0 | 4130 | gtex_brain_putamen_basal |
| rs2585152 | 8 | 143786214 | LY6K | ENSG00000160886.9 | 3.213E-11 | 0 | 4685 | gtex_brain_putamen_basal |
| rs2082801 | 8 | 143786461 | LY6K | ENSG00000160886.9 | 4.864E-8 | 0 | 4932 | gtex_brain_putamen_basal |
| rs2717550 | 8 | 143787808 | LY6K | ENSG00000160886.9 | 3.197E-11 | 0 | 6279 | gtex_brain_putamen_basal |
| rs1469811 | 8 | 143787999 | LY6K | ENSG00000160886.9 | 3.197E-11 | 0 | 6470 | gtex_brain_putamen_basal |
| rs2164307 | 8 | 143788831 | LY6K | ENSG00000160886.9 | 4.839E-8 | 0 | 7302 | gtex_brain_putamen_basal |
| rs1529865 | 8 | 143789171 | LY6K | ENSG00000160886.9 | 4.828E-8 | 0 | 7642 | gtex_brain_putamen_basal |
| rs71514095 | 8 | 143789531 | LY6K | ENSG00000160886.9 | 7.315E-8 | 0 | 8002 | gtex_brain_putamen_basal |
| rs1560986 | 8 | 143789775 | LY6K | ENSG00000160886.9 | 4.816E-8 | 0 | 8246 | gtex_brain_putamen_basal |
| rs2263092 | 8 | 143789966 | LY6K | ENSG00000160886.9 | 3.181E-11 | 0 | 8437 | gtex_brain_putamen_basal |
| rs1594999 | 8 | 143790574 | LY6K | ENSG00000160886.9 | 3.181E-11 | 0 | 9045 | gtex_brain_putamen_basal |
| rs2376491 | 8 | 143790934 | LY6K | ENSG00000160886.9 | 4.804E-8 | 0 | 9405 | gtex_brain_putamen_basal |
| rs2717552 | 8 | 143791300 | LY6K | ENSG00000160886.9 | 3.173E-11 | 0 | 9771 | gtex_brain_putamen_basal |
| rs2585151 | 8 | 143791305 | LY6K | ENSG00000160886.9 | 4.734E-8 | 0 | 9776 | gtex_brain_putamen_basal |
| rs2572902 | 8 | 143791387 | LY6K | ENSG00000160886.9 | 3.173E-11 | 0 | 9858 | gtex_brain_putamen_basal |
| rs2572903 | 8 | 143791406 | LY6K | ENSG00000160886.9 | 4.167E-8 | 0 | 9877 | gtex_brain_putamen_basal |
| rs2572904 | 8 | 143792193 | LY6K | ENSG00000160886.9 | 7.848E-11 | 0 | 10664 | gtex_brain_putamen_basal |
| rs4736373 | 8 | 143792357 | LY6K | ENSG00000160886.9 | 1.781E-8 | 0 | 10828 | gtex_brain_putamen_basal |
| rs2585150 | 8 | 143792669 | LY6K | ENSG00000160886.9 | 3.169E-11 | 0 | 11140 | gtex_brain_putamen_basal |
| rs2585149 | 8 | 143793320 | LY6K | ENSG00000160886.9 | 3.147E-11 | 0 | 11791 | gtex_brain_putamen_basal |
| rs386414249 | 8 | 143794037 | LY6K | ENSG00000160886.9 | 4.968E-8 | 0 | 12508 | gtex_brain_putamen_basal |
| rs2585148 | 8 | 143796193 | LY6K | ENSG00000160886.9 | 4.591E-8 | 0 | 14664 | gtex_brain_putamen_basal |
| rs2572905 | 8 | 143797104 | LY6K | ENSG00000160886.9 | 4.444E-8 | 0 | 15575 | gtex_brain_putamen_basal |
| rs2572906 | 8 | 143798269 | LY6K | ENSG00000160886.9 | 4.25E-8 | 0 | 16740 | gtex_brain_putamen_basal |
| rs2585146 | 8 | 143798641 | LY6K | ENSG00000160886.9 | 1.741E-8 | 0 | 17112 | gtex_brain_putamen_basal |
| rs2585145 | 8 | 143799457 | LY6K | ENSG00000160886.9 | 8.579E-13 | 0 | 17928 | gtex_brain_putamen_basal |
| rs2717606 | 8 | 143799496 | LY6K | ENSG00000160886.9 | 8.579E-13 | 0 | 17967 | gtex_brain_putamen_basal |
| rs376247721 | 8 | 143799666 | LY6K | ENSG00000160886.9 | 1.923E-7 | 0 | 18137 | gtex_brain_putamen_basal |
| rs2585144 | 8 | 143800269 | LY6K | ENSG00000160886.9 | 8.573E-13 | 0 | 18740 | gtex_brain_putamen_basal |
| rs2717605 | 8 | 143801015 | LY6K | ENSG00000160886.9 | 2.142E-8 | 0 | 19486 | gtex_brain_putamen_basal |
| rs2572907 | 8 | 143801938 | LY6K | ENSG00000160886.9 | 3.603E-8 | 0 | 20409 | gtex_brain_putamen_basal |
| rs6998746 | 8 | 143802456 | LY6K | ENSG00000160886.9 | 1.702E-8 | 0 | 20927 | gtex_brain_putamen_basal |
| rs2572908 | 8 | 143802636 | LY6K | ENSG00000160886.9 | 3.581E-8 | 0 | 21107 | gtex_brain_putamen_basal |
| rs2717603 | 8 | 143803193 | LY6K | ENSG00000160886.9 | 8.57E-13 | 0 | 21664 | gtex_brain_putamen_basal |
| rs13250661 | 8 | 143804134 | LY6K | ENSG00000160886.9 | 1.702E-8 | 0 | 22605 | gtex_brain_putamen_basal |
| rs2717602 | 8 | 143805683 | LY6K | ENSG00000160886.9 | 4.434E-9 | 0 | 24154 | gtex_brain_putamen_basal |
| rs60429799 | 8 | 143806069 | LY6K | ENSG00000160886.9 | 7.99E-13 | 0 | 24540 | gtex_brain_putamen_basal |
| rs2585141 | 8 | 143806343 | LY6K | ENSG00000160886.9 | 1.807E-8 | 0 | 24814 | gtex_brain_putamen_basal |
| rs2572909 | 8 | 143806464 | LY6K | ENSG00000160886.9 | 7.838E-13 | 0 | 24935 | gtex_brain_putamen_basal |
| rs2585140 | 8 | 143806896 | LY6K | ENSG00000160886.9 | 7.681E-13 | 0 | 25367 | gtex_brain_putamen_basal |
| rs2717601 | 8 | 143807924 | LY6K | ENSG00000160886.9 | 5.364E-13 | 0 | 26395 | gtex_brain_putamen_basal |
| rs2585139 | 8 | 143808175 | LY6K | ENSG00000160886.9 | 2.839E-10 | 0 | 26646 | gtex_brain_putamen_basal |
| rs2257796 | 8 | 143808667 | LY6K | ENSG00000160886.9 | 6.036E-13 | 0 | 27138 | gtex_brain_putamen_basal |
| rs2585138 | 8 | 143808951 | LY6K | ENSG00000160886.9 | 1.113E-12 | 0 | 27422 | gtex_brain_putamen_basal |
| rs2257840 | 8 | 143809193 | LY6K | ENSG00000160886.9 | 2.999E-11 | 0 | 27664 | gtex_brain_putamen_basal |
| rs2585136 | 8 | 143812141 | LY6K | ENSG00000160886.9 | 1.831E-10 | 0 | 30612 | gtex_brain_putamen_basal |
| rs11780127 | 8 | 143813513 | LY6K | ENSG00000160886.9 | 1.503E-6 | 0 | 31984 | gtex_brain_putamen_basal |
| rs2717600 | 8 | 143813988 | LY6K | ENSG00000160886.9 | 1.677E-9 | 0 | 32459 | gtex_brain_putamen_basal |
| rs2585135 | 8 | 143814193 | LY6K | ENSG00000160886.9 | 2.037E-9 | 0 | 32664 | gtex_brain_putamen_basal |
| rs10087426 | 8 | 143814554 | LY6K | ENSG00000160886.9 | 1.091E-7 | 0 | 33025 | gtex_brain_putamen_basal |
| rs11785290 | 8 | 143814849 | LY6K | ENSG00000160886.9 | 4.05E-7 | 0 | 33320 | gtex_brain_putamen_basal |
| rs10624245 | 8 | 143815697 | LY6K | ENSG00000160886.9 | 4E-9 | 0 | 34168 | gtex_brain_putamen_basal |
| rs3736010 | 8 | 143817503 | LY6K | ENSG00000160886.9 | 4.169E-7 | 0 | 35974 | gtex_brain_putamen_basal |
| rs3736011 | 8 | 143817789 | LY6K | ENSG00000160886.9 | 1.984E-7 | 0 | 36260 | gtex_brain_putamen_basal |
| rs10956985 | 8 | 143818750 | LY6K | ENSG00000160886.9 | 4.295E-7 | 0 | 37221 | gtex_brain_putamen_basal |
| rs7828042 | 8 | 143819383 | LY6K | ENSG00000160886.9 | 1.98E-7 | 0 | 37854 | gtex_brain_putamen_basal |
| rs12543368 | 8 | 143819450 | LY6K | ENSG00000160886.9 | 4.45E-7 | 0 | 37921 | gtex_brain_putamen_basal |
| rs10110970 | 8 | 143820410 | LY6K | ENSG00000160886.9 | 1.98E-7 | 0 | 38881 | gtex_brain_putamen_basal |
| rs34956412 | 8 | 143822028 | LY6K | ENSG00000160886.9 | 4.338E-7 | 0 | 40499 | gtex_brain_putamen_basal |
| rs4736321 | 8 | 143822194 | LY6K | ENSG00000160886.9 | 4.32E-7 | 0 | 40665 | gtex_brain_putamen_basal |
| rs4736322 | 8 | 143822208 | LY6K | ENSG00000160886.9 | 1.965E-7 | 0 | 40679 | gtex_brain_putamen_basal |
| rs13254346 | 8 | 143823863 | LY6K | ENSG00000160886.9 | 1.98E-7 | 0 | 42334 | gtex_brain_putamen_basal |
| rs13254358 | 8 | 143823876 | LY6K | ENSG00000160886.9 | 4.254E-7 | 0 | 42347 | gtex_brain_putamen_basal |
| rs3758081 | 8 | 143824373 | LY6K | ENSG00000160886.9 | 4.338E-7 | 0 | 42844 | gtex_brain_putamen_basal |
| rs3758082 | 8 | 143824483 | LY6K | ENSG00000160886.9 | 1.98E-7 | 0 | 42954 | gtex_brain_putamen_basal |
| rs7010768 | 8 | 143825951 | LY6K | ENSG00000160886.9 | 3.309E-7 | 0 | 44422 | gtex_brain_putamen_basal |
| rs141156042 | 8 | 143825981 | LY6K | ENSG00000160886.9 | 2.479E-7 | 0 | 44452 | gtex_brain_putamen_basal |
| rs4736300 | 8 | 143829269 | LY6K | ENSG00000160886.9 | 4.338E-7 | 0 | 47740 | gtex_brain_putamen_basal |
| rs4736301 | 8 | 143829499 | LY6K | ENSG00000160886.9 | 2.203E-7 | 0 | 47970 | gtex_brain_putamen_basal |
| rs4736323 | 8 | 143830359 | LY6K | ENSG00000160886.9 | 4.338E-7 | 0 | 48830 | gtex_brain_putamen_basal |
| rs4736324 | 8 | 143830462 | LY6K | ENSG00000160886.9 | 2.034E-7 | 0 | 48933 | gtex_brain_putamen_basal |
| rs2572876 | 8 | 143830599 | LY6K | ENSG00000160886.9 | 4.235E-7 | 0 | 49070 | gtex_brain_putamen_basal |
| rs2016749 | 8 | 143836118 | LY6K | ENSG00000160886.9 | 6.755E-10 | 0 | 54589 | gtex_brain_putamen_basal |
| rs2572874 | 8 | 143837219 | LY6K | ENSG00000160886.9 | 7.52E-10 | 0 | 55690 | gtex_brain_putamen_basal |
| rs10108887 | 8 | 143837749 | LY6K | ENSG00000160886.9 | 1.946E-9 | 0 | 56220 | gtex_brain_putamen_basal |
| rs7813604 | 8 | 143838062 | LY6K | ENSG00000160886.9 | 6.611E-10 | 0 | 56533 | gtex_brain_putamen_basal |
| rs13259549 | 8 | 143838519 | LY6K | ENSG00000160886.9 | 5.902E-10 | 0 | 56990 | gtex_brain_putamen_basal |
| rs13279795 | 8 | 143838669 | LY6K | ENSG00000160886.9 | 1.554E-9 | 0 | 57140 | gtex_brain_putamen_basal |
| rs2099464 | 8 | 143839163 | LY6K | ENSG00000160886.9 | 1.775E-7 | 0 | 57634 | gtex_brain_putamen_basal |
| rs72543656 | 8 | 143839323 | LY6K | ENSG00000160886.9 | 5.324E-10 | 0 | 57794 | gtex_brain_putamen_basal |
| rs35489125 | 8 | 143839324 | LY6K | ENSG00000160886.9 | 6.656E-10 | 0 | 57795 | gtex_brain_putamen_basal |
| rs28576258 | 8 | 143841249 | LY6K | ENSG00000160886.9 | 1.475E-9 | 0 | 59720 | gtex_brain_putamen_basal |
| rs6992585 | 8 | 143842689 | LY6K | ENSG00000160886.9 | 1.164E-10 | 0 | 61160 | gtex_brain_putamen_basal |
| rs1036385 | 8 | 143842901 | LY6K | ENSG00000160886.9 | 2.544E-9 | 0 | 61372 | gtex_brain_putamen_basal |
| rs13275873 | 8 | 143843302 | LY6K | ENSG00000160886.9 | 1.484E-9 | 0 | 61773 | gtex_brain_putamen_basal |
| rs10094888 | 8 | 143843834 | LY6K | ENSG00000160886.9 | 7.983E-9 | 0 | 62305 | gtex_brain_putamen_basal |
| rs7000648 | 8 | 143844051 | LY6K | ENSG00000160886.9 | 5.031E-9 | 0 | 62522 | gtex_brain_putamen_basal |
| rs7013131 | 8 | 143844210 | LY6K | ENSG00000160886.9 | 1.418E-8 | 0 | 62681 | gtex_brain_putamen_basal |
| rs11991937 | 8 | 143844458 | LY6K | ENSG00000160886.9 | 1.753E-8 | 0 | 62929 | gtex_brain_putamen_basal |
| rs7012804 | 8 | 143844650 | LY6K | ENSG00000160886.9 | 9.532E-8 | 0 | 63121 | gtex_brain_putamen_basal |
| rs7005423 | 8 | 143844661 | LY6K | ENSG00000160886.9 | 6.343E-9 | 0 | 63132 | gtex_brain_putamen_basal |
| rs7005613 | 8 | 143844819 | LY6K | ENSG00000160886.9 | 6.764E-9 | 0 | 63290 | gtex_brain_putamen_basal |
| rs7005927 | 8 | 143845023 | LY6K | ENSG00000160886.9 | 7.366E-9 | 0 | 63494 | gtex_brain_putamen_basal |
| rs7822193 | 8 | 143845269 | LY6K | ENSG00000160886.9 | 8.188E-9 | 0 | 63740 | gtex_brain_putamen_basal |
| rs7812623 | 8 | 143845449 | LY6K | ENSG00000160886.9 | 2.805E-7 | 0 | 63920 | gtex_brain_putamen_basal |
| rs7825980 | 8 | 143845459 | LY6K | ENSG00000160886.9 | 2.868E-7 | 0 | 63930 | gtex_brain_putamen_basal |
| rs7816480 | 8 | 143845714 | LY6K | ENSG00000160886.9 | 2.699E-8 | 0 | 64185 | gtex_brain_putamen_basal |
| rs13276915 | 8 | 143850858 | LY6K | ENSG00000160886.9 | 1.381E-6 | 0 | 69329 | gtex_brain_putamen_basal |
| rs62525624 | 8 | 143852588 | LY6K | ENSG00000160886.9 | 1.414E-6 | 0 | 71059 | gtex_brain_putamen_basal |
| rs60714144 | 8 | 143867157 | LY6K | ENSG00000160886.9 | 1.319E-6 | 0 | 85628 | gtex_brain_putamen_basal |
| rs2572924 | 8 | 143869114 | LY6K | ENSG00000160886.9 | 5.463E-7 | 0 | 87585 | gtex_brain_putamen_basal |
| rs10956986 | 8 | 143886601 | LY6K | ENSG00000160886.9 | 1.859E-7 | 0 | 105072 | gtex_brain_putamen_basal |
| rs10956987 | 8 | 143886613 | LY6K | ENSG00000160886.9 | 1.859E-7 | 0 | 105084 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| NAKAMURA TUMOR ZONE PERIPHERAL VS CENTRAL UP | 285 | 181 | All SZGR 2.0 genes in this pathway |
| CHARAFE BREAST CANCER LUMINAL VS BASAL DN | 455 | 304 | All SZGR 2.0 genes in this pathway |
| NIKOLSKY BREAST CANCER 8Q23 Q24 AMPLICON | 157 | 87 | All SZGR 2.0 genes in this pathway |
| DURCHDEWALD SKIN CARCINOGENESIS DN | 264 | 168 | All SZGR 2.0 genes in this pathway |
| GAVIN FOXP3 TARGETS CLUSTER P2 | 79 | 55 | All SZGR 2.0 genes in this pathway |
| MIKKELSEN ES HCP WITH H3 UNMETHYLATED | 63 | 31 | All SZGR 2.0 genes in this pathway |
| MIKKELSEN MEF HCP WITH H3 UNMETHYLATED | 228 | 119 | All SZGR 2.0 genes in this pathway |
| CHYLA CBFA2T3 TARGETS DN | 242 | 146 | All SZGR 2.0 genes in this pathway |
| SERVITJA LIVER HNF1A TARGETS UP | 135 | 96 | All SZGR 2.0 genes in this pathway |
| FORTSCHEGGER PHF8 TARGETS DN | 784 | 464 | All SZGR 2.0 genes in this pathway |