Gene Page: LINC00474
Summary ?
| GeneID | 58483 |
| Symbol | LINC00474 |
| Synonyms | C9orf27|EST-YD1 |
| Description | long intergenic non-protein coding RNA 474 |
| Reference | HGNC:HGNC:23367|HPRD:12951| |
| Gene type | ncRNA |
| Map location | 9q31.3 |
| Pascal p-value | 0.023 |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
| Top 10 positively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| EIF3L | 0.96 | 0.94 |
| EIF4A1 | 0.96 | 0.95 |
| EEF2 | 0.96 | 0.94 |
| EIF3D | 0.95 | 0.92 |
| RBM4 | 0.95 | 0.94 |
| PRPSAP2 | 0.95 | 0.94 |
| DHPS | 0.94 | 0.92 |
| TRIM28 | 0.94 | 0.92 |
| QARS | 0.94 | 0.92 |
| C12orf41 | 0.94 | 0.94 |
| Top 10 negatively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| MT-CO2 | -0.75 | -0.89 |
| AF347015.27 | -0.75 | -0.89 |
| HLA-F | -0.75 | -0.80 |
| AF347015.31 | -0.75 | -0.88 |
| AIFM3 | -0.75 | -0.80 |
| AF347015.33 | -0.74 | -0.88 |
| MT-CYB | -0.73 | -0.88 |
| C5orf53 | -0.73 | -0.77 |
| AF347015.8 | -0.72 | -0.89 |
| HEPN1 | -0.71 | -0.78 |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| MOHANKUMAR TLX1 TARGETS UP | 414 | 287 | All SZGR 2.0 genes in this pathway |
| ZWANG EGF INTERVAL UP | 105 | 46 | All SZGR 2.0 genes in this pathway |