Summary ?
Descriptioncoiled-coil domain containing 90B
Gene typeprotein-coding
Map location11q14.1
Pascal p-value1.297E-4
Sherlock p-value0.651
eGeneCaudate basal ganglia
Cerebellar Hemisphere
Nucleus accumbens basal ganglia
Myers' cis & trans

Gene in Data Sources
Gene set name Method of gene setDescriptionInfo
CV:PGCnpGenome-wide Association StudyGWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP IDChromosomePositioneGeneGene Entrez IDpvalueqvalueTSS distanceeQTL type

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions

Section IV. Protein-protein interaction annotation

InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
AGR2AG2 | GOB-4 | HAG-2 | XAG-2anterior gradient homolog 2 (Xenopus laevis)Two-hybridBioGRID16169070 
AOF2BHC110 | KDM1 | KIAA0601 | LSD1amine oxidase (flavin containing) domain 2Two-hybridBioGRID16169070 
ARL15ARFRP2 | FLJ20051ADP-ribosylation factor-like 15Two-hybridBioGRID16169070 
BTBD2-BTB (POZ) domain containing 2Two-hybridBioGRID16169070 
C11orf59FLJ20625chromosome 11 open reading frame 59Two-hybridBioGRID16169070 
C11orf79FLJ20487chromosome 11 open reading frame 79Two-hybridBioGRID16169070 
CDKN2BCDK4I | INK4B | MTS2 | P15 | TP15 | p15INK4bcyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)Two-hybridBioGRID16169070 
CDKN2CINK4C | p18 | p18-INK4Ccyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)Two-hybridBioGRID16169070 
DLEU1BCMS | DLB1 | DLEU2 | LEU1 | LEU2 | MGC22430 | NCRNA00021 | XTP6deleted in lymphocytic leukemia 1 (non-protein coding)Two-hybridBioGRID16169070 
EIF2S2DKFZp686L18198 | EIF2 | EIF2B | EIF2beta | MGC8508eukaryotic translation initiation factor 2, subunit 2 beta, 38kDaTwo-hybridBioGRID16169070 
FXYD6-FXYD domain containing ion transport regulator 6Two-hybridBioGRID16169070 
NACAHSD48 | MGC117224 | NACA1nascent polypeptide-associated complex alpha subunitTwo-hybridBioGRID16169070 
NPFLJ94043 | FLJ97288 | FLJ97312 | MGC117396 | MGC125915 | MGC125916 | PNP | PRO1837 | PUNPnucleoside phosphorylaseTwo-hybridBioGRID16169070 
PAFAH1B3-platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDaTwo-hybridBioGRID16169070 
PCDHA4CNR1 | CNRN1 | CRNR1 | MGC138307 | MGC142169 | PCDH-ALPHA4protocadherin alpha 4Two-hybridBioGRID16169070 
PRDX5ACR1 | AOEB166 | B166 | MGC117264 | MGC142283 | MGC142285 | PLP | PMP20 | PRDX6 | PRXV | SBBI10peroxiredoxin 5Two-hybridBioGRID16169070 
PSMD11MGC3844 | Rpn6 | S9 | p44.5proteasome (prosome, macropain) 26S subunit, non-ATPase, 11Two-hybridBioGRID16169070 
RGL2HKE1.5 | KE1.5 | RAB2Lral guanine nucleotide dissociation stimulator-like 2Two-hybridBioGRID16169070 
RNF10KIAA0262 | MGC126758 | MGC126764 | RIE2ring finger protein 10Two-hybridBioGRID16169070 
SAT1DC21 | KFSD | SAT | SSAT | SSAT-1spermidine/spermine N1-acetyltransferase 1Two-hybridBioGRID16169070 
SERPINB9CAP-3 | CAP3 | PI9serpin peptidase inhibitor, clade B (ovalbumin), member 9Two-hybridBioGRID16169070 
TAC3NKB | NKNB | PRO1155 | ZNEUROK1tachykinin 3Two-hybridBioGRID16169070 
TK1TK2thymidine kinase 1, solubleTwo-hybridBioGRID16169070 
TSC22D1DKFZp686O19206 | MGC17597 | RP11-269C23.2 | TGFB1I4 | TSC22TSC22 domain family, member 1Two-hybridBioGRID16169070 

Section V. Pathway annotation

Pathway namePathway size# SZGR 2.0 genes in pathwayInfo
RHEIN ALL GLUCOCORTICOID THERAPY DN 362238All SZGR 2.0 genes in this pathway
CHOI ATL STAGE PREDICTOR 4424All SZGR 2.0 genes in this pathway
NUYTTEN EZH2 TARGETS DN 1024594All SZGR 2.0 genes in this pathway
BENPORATH CYCLING GENES 648385All SZGR 2.0 genes in this pathway
SHEN SMARCA2 TARGETS UP 424268All SZGR 2.0 genes in this pathway
LEE LIVER CANCER E2F1 DN 6442All SZGR 2.0 genes in this pathway
MONNIER POSTRADIATION TUMOR ESCAPE DN 373196All SZGR 2.0 genes in this pathway
ZHANG BREAST CANCER PROGENITORS UP 425253All SZGR 2.0 genes in this pathway
BERNARD PPAPDC1B TARGETS UP 4020All SZGR 2.0 genes in this pathway
MILI PSEUDOPODIA HAPTOTAXIS UP 518299All SZGR 2.0 genes in this pathway
WHITFIELD CELL CYCLE G2 M 216124All SZGR 2.0 genes in this pathway
BRUINS UVC RESPONSE LATE 1137655All SZGR 2.0 genes in this pathway
SMIRNOV RESPONSE TO IR 6HR UP 16697All SZGR 2.0 genes in this pathway