Gene Page: LMF1
Summary ?
| GeneID | 64788 |
| Symbol | LMF1 |
| Synonyms | C16orf26|HMFN1876|JFP11|TMEM112|TMEM112A |
| Description | lipase maturation factor 1 |
| Reference | MIM:611761|HGNC:HGNC:14154|Ensembl:ENSG00000103227|Ensembl:ENSG00000260807|HPRD:07789|Vega:OTTHUMG00000047848 |
| Gene type | protein-coding |
| Map location | 16p13.3 |
| Pascal p-value | 0.212 |
| Fetal beta | -0.53 |
| DMG | 1 (# studies) |
| eGene | Anterior cingulate cortex BA24 Caudate basal ganglia Cerebellar Hemisphere Cerebellum Cortex Frontal Cortex BA9 |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| DMG:Wockner_2014 | Genome-wide DNA methylation analysis | This dataset includes 4641 differentially methylated probes corresponding to 2929 unique genes between schizophrenia patients (n=24) and controls (n=24). | 2 |
Section I. Genetics and epigenetics annotation
Differentially methylated gene
| Probe | Chromosome | Position | Nearest gene | P (dis) | Beta (dis) | FDR (dis) | Study |
|---|---|---|---|---|---|---|---|
| cg08336687 | 16 | 907744 | LMF1 | 1.37E-5 | -0.555 | 0.014 | DMG:Wockner_2014 |
| cg07197480 | 16 | 1017808 | LMF1 | 3.932E-4 | 0.358 | 0.043 | DMG:Wockner_2014 |
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs11859028 | 16 | 949766 | LMF1 | ENSG00000103227.14 | 1.754E-10 | 0 | 71233 | gtex_brain_ba24 |
| rs12918114 | 16 | 949905 | LMF1 | ENSG00000103227.14 | 1.906E-7 | 0 | 71094 | gtex_brain_ba24 |
| rs12924608 | 16 | 950007 | LMF1 | ENSG00000103227.14 | 2.691E-8 | 0 | 70992 | gtex_brain_ba24 |
| rs12925210 | 16 | 950434 | LMF1 | ENSG00000103227.14 | 1.473E-8 | 0 | 70565 | gtex_brain_ba24 |
| rs8046999 | 16 | 950446 | LMF1 | ENSG00000103227.14 | 1.478E-8 | 0 | 70553 | gtex_brain_ba24 |
| rs8043681 | 16 | 950729 | LMF1 | ENSG00000103227.14 | 2.265E-8 | 0 | 70270 | gtex_brain_ba24 |
| rs4262947 | 16 | 950922 | LMF1 | ENSG00000103227.14 | 1.627E-8 | 0 | 70077 | gtex_brain_ba24 |
| rs4474684 | 16 | 951045 | LMF1 | ENSG00000103227.14 | 1.669E-8 | 0 | 69954 | gtex_brain_ba24 |
| rs4984960 | 16 | 951309 | LMF1 | ENSG00000103227.14 | 1.551E-8 | 0 | 69690 | gtex_brain_ba24 |
| rs11350493 | 16 | 951372 | LMF1 | ENSG00000103227.14 | 9.104E-9 | 0 | 69627 | gtex_brain_ba24 |
| rs4984961 | 16 | 951567 | LMF1 | ENSG00000103227.14 | 8.199E-9 | 0 | 69432 | gtex_brain_ba24 |
| rs4984962 | 16 | 951598 | LMF1 | ENSG00000103227.14 | 8.166E-9 | 0 | 69401 | gtex_brain_ba24 |
| rs926238 | 16 | 952107 | LMF1 | ENSG00000103227.14 | 1.512E-6 | 0 | 68892 | gtex_brain_ba24 |
| rs926239 | 16 | 952283 | LMF1 | ENSG00000103227.14 | 5.938E-7 | 0 | 68716 | gtex_brain_ba24 |
| rs56245114 | 16 | 952432 | LMF1 | ENSG00000103227.14 | 5.852E-7 | 0 | 68567 | gtex_brain_ba24 |
| rs57588145 | 16 | 952552 | LMF1 | ENSG00000103227.14 | 5.782E-7 | 0 | 68447 | gtex_brain_ba24 |
| rs60309987 | 16 | 952559 | LMF1 | ENSG00000103227.14 | 5.778E-7 | 0 | 68440 | gtex_brain_ba24 |
| rs59119237 | 16 | 952617 | LMF1 | ENSG00000103227.14 | 3.426E-7 | 0 | 68382 | gtex_brain_ba24 |
| rs60125595 | 16 | 952695 | LMF1 | ENSG00000103227.14 | 9.169E-7 | 0 | 68304 | gtex_brain_ba24 |
| rs4984968 | 16 | 956519 | LMF1 | ENSG00000103227.14 | 6.817E-7 | 0 | 64480 | gtex_brain_ba24 |
| rs9934862 | 16 | 957111 | LMF1 | ENSG00000103227.14 | 5.912E-7 | 0 | 63888 | gtex_brain_ba24 |
| rs12719812 | 16 | 957278 | LMF1 | ENSG00000103227.14 | 6.045E-7 | 0 | 63721 | gtex_brain_ba24 |
| rs4984969 | 16 | 957885 | LMF1 | ENSG00000103227.14 | 6.604E-7 | 0 | 63114 | gtex_brain_ba24 |
| rs4984970 | 16 | 957999 | LMF1 | ENSG00000103227.14 | 6.604E-7 | 0 | 63000 | gtex_brain_ba24 |
| rs4984972 | 16 | 958301 | LMF1 | ENSG00000103227.14 | 6.604E-7 | 0 | 62698 | gtex_brain_ba24 |
| rs4984974 | 16 | 958506 | LMF1 | ENSG00000103227.14 | 4.715E-7 | 0 | 62493 | gtex_brain_ba24 |
| rs9935758 | 16 | 958759 | LMF1 | ENSG00000103227.14 | 6.604E-7 | 0 | 62240 | gtex_brain_ba24 |
| rs4984975 | 16 | 959503 | LMF1 | ENSG00000103227.14 | 1.94E-7 | 0 | 61496 | gtex_brain_ba24 |
| rs4247098 | 16 | 959738 | LMF1 | ENSG00000103227.14 | 3.897E-7 | 0 | 61261 | gtex_brain_ba24 |
| rs760561 | 16 | 959774 | LMF1 | ENSG00000103227.14 | 2.154E-6 | 0 | 61225 | gtex_brain_ba24 |
| rs742036 | 16 | 960725 | LMF1 | ENSG00000103227.14 | 9.075E-9 | 0 | 60274 | gtex_brain_ba24 |
| rs12600110 | 16 | 962154 | LMF1 | ENSG00000103227.14 | 8.859E-9 | 0 | 58845 | gtex_brain_ba24 |
| rs4984978 | 16 | 963293 | LMF1 | ENSG00000103227.14 | 6.357E-7 | 0 | 57706 | gtex_brain_ba24 |
| rs4984979 | 16 | 963315 | LMF1 | ENSG00000103227.14 | 2.103E-7 | 0 | 57684 | gtex_brain_ba24 |
| rs4389145 | 16 | 963708 | LMF1 | ENSG00000103227.14 | 6.357E-7 | 0 | 57291 | gtex_brain_ba24 |
| rs11866415 | 16 | 964363 | LMF1 | ENSG00000103227.14 | 2.109E-7 | 0 | 56636 | gtex_brain_ba24 |
| rs12920286 | 16 | 965798 | LMF1 | ENSG00000103227.14 | 1.163E-6 | 0 | 55201 | gtex_brain_ba24 |
| rs12918782 | 16 | 967241 | LMF1 | ENSG00000103227.14 | 1.428E-6 | 0 | 53758 | gtex_brain_ba24 |
| rs9889137 | 16 | 968717 | LMF1 | ENSG00000103227.14 | 7.959E-9 | 0 | 52282 | gtex_brain_ba24 |
| rs11864735 | 16 | 968836 | LMF1 | ENSG00000103227.14 | 4.498E-7 | 0 | 52163 | gtex_brain_ba24 |
| rs4984981 | 16 | 969319 | LMF1 | ENSG00000103227.14 | 7.057E-7 | 0 | 51680 | gtex_brain_ba24 |
| rs4984982 | 16 | 970598 | LMF1 | ENSG00000103227.14 | 3.246E-7 | 0 | 50401 | gtex_brain_ba24 |
| rs9888914 | 16 | 970814 | LMF1 | ENSG00000103227.14 | 7.625E-9 | 0 | 50185 | gtex_brain_ba24 |
| rs929068 | 16 | 976536 | LMF1 | ENSG00000103227.14 | 2.184E-7 | 0 | 44463 | gtex_brain_ba24 |
| rs4984719 | 16 | 979006 | LMF1 | ENSG00000103227.14 | 1.638E-6 | 0 | 41993 | gtex_brain_ba24 |
| rs12927578 | 16 | 980088 | LMF1 | ENSG00000103227.14 | 5.447E-9 | 0 | 40911 | gtex_brain_ba24 |
| rs12719815 | 16 | 980316 | LMF1 | ENSG00000103227.14 | 4.425E-8 | 0 | 40683 | gtex_brain_ba24 |
| rs11248955 | 16 | 984113 | LMF1 | ENSG00000103227.14 | 3.715E-8 | 0 | 36886 | gtex_brain_ba24 |
| rs1544799 | 16 | 985717 | LMF1 | ENSG00000103227.14 | 3.036E-7 | 0 | 35282 | gtex_brain_ba24 |
| rs7184419 | 16 | 985767 | LMF1 | ENSG00000103227.14 | 3.036E-7 | 0 | 35232 | gtex_brain_ba24 |
| rs1544800 | 16 | 985947 | LMF1 | ENSG00000103227.14 | 3.057E-7 | 0 | 35052 | gtex_brain_ba24 |
| rs9674061 | 16 | 986074 | LMF1 | ENSG00000103227.14 | 3.057E-7 | 0 | 34925 | gtex_brain_ba24 |
| rs12598230 | 16 | 986168 | LMF1 | ENSG00000103227.14 | 2.683E-7 | 0 | 34831 | gtex_brain_ba24 |
| rs58619814 | 16 | 986377 | LMF1 | ENSG00000103227.14 | 5.611E-8 | 0 | 34622 | gtex_brain_ba24 |
| rs4984988 | 16 | 986758 | LMF1 | ENSG00000103227.14 | 3.064E-7 | 0 | 34241 | gtex_brain_ba24 |
| rs9328929 | 16 | 986989 | LMF1 | ENSG00000103227.14 | 3.057E-7 | 0 | 34010 | gtex_brain_ba24 |
| rs9328930 | 16 | 987112 | LMF1 | ENSG00000103227.14 | 4.22E-9 | 0 | 33887 | gtex_brain_ba24 |
| rs9328931 | 16 | 987118 | LMF1 | ENSG00000103227.14 | 4.22E-9 | 0 | 33881 | gtex_brain_ba24 |
| rs5015441 | 16 | 987256 | LMF1 | ENSG00000103227.14 | 4.457E-8 | 0 | 33743 | gtex_brain_ba24 |
| rs5015440 | 16 | 987298 | LMF1 | ENSG00000103227.14 | 4.457E-8 | 0 | 33701 | gtex_brain_ba24 |
| rs5015439 | 16 | 987358 | LMF1 | ENSG00000103227.14 | 4.634E-8 | 0 | 33641 | gtex_brain_ba24 |
| rs5015437 | 16 | 987371 | LMF1 | ENSG00000103227.14 | 3.927E-8 | 0 | 33628 | gtex_brain_ba24 |
| rs9328932 | 16 | 987454 | LMF1 | ENSG00000103227.14 | 4.457E-8 | 0 | 33545 | gtex_brain_ba24 |
| rs9328933 | 16 | 987520 | LMF1 | ENSG00000103227.14 | 4.148E-8 | 0 | 33479 | gtex_brain_ba24 |
| rs9746775 | 16 | 987877 | LMF1 | ENSG00000103227.14 | 2.724E-9 | 0 | 33122 | gtex_brain_ba24 |
| rs9746456 | 16 | 987935 | LMF1 | ENSG00000103227.14 | 4.414E-8 | 0 | 33064 | gtex_brain_ba24 |
| rs9746779 | 16 | 987940 | LMF1 | ENSG00000103227.14 | 1.514E-7 | 0 | 33059 | gtex_brain_ba24 |
| rs5029140 | 16 | 987972 | LMF1 | ENSG00000103227.14 | 4.457E-8 | 0 | 33027 | gtex_brain_ba24 |
| rs5029141 | 16 | 987996 | LMF1 | ENSG00000103227.14 | 1.109E-7 | 0 | 33003 | gtex_brain_ba24 |
| rs5029142 | 16 | 988070 | LMF1 | ENSG00000103227.14 | 4.457E-8 | 0 | 32929 | gtex_brain_ba24 |
| rs9941342 | 16 | 988168 | LMF1 | ENSG00000103227.14 | 4.457E-8 | 0 | 32831 | gtex_brain_ba24 |
| rs9937307 | 16 | 988197 | LMF1 | ENSG00000103227.14 | 4.457E-8 | 0 | 32802 | gtex_brain_ba24 |
| rs4984722 | 16 | 988437 | LMF1 | ENSG00000103227.14 | 4.457E-8 | 0 | 32562 | gtex_brain_ba24 |
| rs4984723 | 16 | 988483 | LMF1 | ENSG00000103227.14 | 4.457E-8 | 0 | 32516 | gtex_brain_ba24 |
| rs4984724 | 16 | 988578 | LMF1 | ENSG00000103227.14 | 4.457E-8 | 0 | 32421 | gtex_brain_ba24 |
| rs4984989 | 16 | 988728 | LMF1 | ENSG00000103227.14 | 4.066E-8 | 0 | 32271 | gtex_brain_ba24 |
| rs4984990 | 16 | 988889 | LMF1 | ENSG00000103227.14 | 4.438E-8 | 0 | 32110 | gtex_brain_ba24 |
| rs8044961 | 16 | 988998 | LMF1 | ENSG00000103227.14 | 4.428E-8 | 0 | 32001 | gtex_brain_ba24 |
| rs8049417 | 16 | 989191 | LMF1 | ENSG00000103227.14 | 8.883E-9 | 0 | 31808 | gtex_brain_ba24 |
| rs11326032 | 16 | 989254 | LMF1 | ENSG00000103227.14 | 4.727E-8 | 0 | 31745 | gtex_brain_ba24 |
| rs17146052 | 16 | 989613 | LMF1 | ENSG00000103227.14 | 1.094E-7 | 0 | 31386 | gtex_brain_ba24 |
| rs8062983 | 16 | 989721 | LMF1 | ENSG00000103227.14 | 4.447E-8 | 0 | 31278 | gtex_brain_ba24 |
| rs8050649 | 16 | 989843 | LMF1 | ENSG00000103227.14 | 4.368E-8 | 0 | 31156 | gtex_brain_ba24 |
| rs8055748 | 16 | 989858 | LMF1 | ENSG00000103227.14 | 8.64E-9 | 0 | 31141 | gtex_brain_ba24 |
| rs9927663 | 16 | 990021 | LMF1 | ENSG00000103227.14 | 4.316E-8 | 0 | 30978 | gtex_brain_ba24 |
| rs4984991 | 16 | 990142 | LMF1 | ENSG00000103227.14 | 4.305E-8 | 0 | 30857 | gtex_brain_ba24 |
| rs4984725 | 16 | 990316 | LMF1 | ENSG00000103227.14 | 4.274E-8 | 0 | 30683 | gtex_brain_ba24 |
| rs4984726 | 16 | 990320 | LMF1 | ENSG00000103227.14 | 4.274E-8 | 0 | 30679 | gtex_brain_ba24 |
| rs4984727 | 16 | 990400 | LMF1 | ENSG00000103227.14 | 1.077E-7 | 0 | 30599 | gtex_brain_ba24 |
| rs4984728 | 16 | 990459 | LMF1 | ENSG00000103227.14 | 4.265E-8 | 0 | 30540 | gtex_brain_ba24 |
| rs4984729 | 16 | 990519 | LMF1 | ENSG00000103227.14 | 4.267E-8 | 0 | 30480 | gtex_brain_ba24 |
| rs12597461 | 16 | 990696 | LMF1 | ENSG00000103227.14 | 4.265E-8 | 0 | 30303 | gtex_brain_ba24 |
| rs12598405 | 16 | 990791 | LMF1 | ENSG00000103227.14 | 8.134E-9 | 0 | 30208 | gtex_brain_ba24 |
| rs56834034 | 16 | 990800 | LMF1 | ENSG00000103227.14 | 1.143E-6 | 0 | 30199 | gtex_brain_ba24 |
| rs12597498 | 16 | 990815 | LMF1 | ENSG00000103227.14 | 8.117E-9 | 0 | 30184 | gtex_brain_ba24 |
| rs12598882 | 16 | 991002 | LMF1 | ENSG00000103227.14 | 4.253E-8 | 0 | 29997 | gtex_brain_ba24 |
| rs4984614 | 16 | 991219 | LMF1 | ENSG00000103227.14 | 4.252E-8 | 0 | 29780 | gtex_brain_ba24 |
| rs4984615 | 16 | 991249 | LMF1 | ENSG00000103227.14 | 8.044E-9 | 0 | 29750 | gtex_brain_ba24 |
| rs2164340 | 16 | 991872 | LMF1 | ENSG00000103227.14 | 4.242E-8 | 0 | 29127 | gtex_brain_ba24 |
| rs1465760 | 16 | 992091 | LMF1 | ENSG00000103227.14 | 4.24E-8 | 0 | 28908 | gtex_brain_ba24 |
| rs1465761 | 16 | 992300 | LMF1 | ENSG00000103227.14 | 4.236E-8 | 0 | 28699 | gtex_brain_ba24 |
| rs4984731 | 16 | 992590 | LMF1 | ENSG00000103227.14 | 1.149E-6 | 0 | 28409 | gtex_brain_ba24 |
| rs7199601 | 16 | 992729 | LMF1 | ENSG00000103227.14 | 1.654E-6 | 0 | 28270 | gtex_brain_ba24 |
| rs8063213 | 16 | 992961 | LMF1 | ENSG00000103227.14 | 3.84E-9 | 0 | 28038 | gtex_brain_ba24 |
| rs8054205 | 16 | 993099 | LMF1 | ENSG00000103227.14 | 4.228E-8 | 0 | 27900 | gtex_brain_ba24 |
| rs8062750 | 16 | 993287 | LMF1 | ENSG00000103227.14 | 1.521E-7 | 0 | 27712 | gtex_brain_ba24 |
| rs2382943 | 16 | 993468 | LMF1 | ENSG00000103227.14 | 4.228E-8 | 0 | 27531 | gtex_brain_ba24 |
| rs2382944 | 16 | 993497 | LMF1 | ENSG00000103227.14 | 1.378E-7 | 0 | 27502 | gtex_brain_ba24 |
| rs2382946 | 16 | 993667 | LMF1 | ENSG00000103227.14 | 4.145E-8 | 0 | 27332 | gtex_brain_ba24 |
| rs2382947 | 16 | 993820 | LMF1 | ENSG00000103227.14 | 4.219E-8 | 0 | 27179 | gtex_brain_ba24 |
| rs8043632 | 16 | 994050 | LMF1 | ENSG00000103227.14 | 4.22E-8 | 0 | 26949 | gtex_brain_ba24 |
| rs9925506 | 16 | 994162 | LMF1 | ENSG00000103227.14 | 4.221E-8 | 0 | 26837 | gtex_brain_ba24 |
| rs12926731 | 16 | 994699 | LMF1 | ENSG00000103227.14 | 1.08E-7 | 0 | 26300 | gtex_brain_ba24 |
| rs4984732 | 16 | 994775 | LMF1 | ENSG00000103227.14 | 4.211E-8 | 0 | 26224 | gtex_brain_ba24 |
| rs398119156 | 16 | 994918 | LMF1 | ENSG00000103227.14 | 3.792E-8 | 0 | 26081 | gtex_brain_ba24 |
| rs4984733 | 16 | 995082 | LMF1 | ENSG00000103227.14 | 4.212E-8 | 0 | 25917 | gtex_brain_ba24 |
| rs2060492 | 16 | 995101 | LMF1 | ENSG00000103227.14 | 4.212E-8 | 0 | 25898 | gtex_brain_ba24 |
| rs2060493 | 16 | 995156 | LMF1 | ENSG00000103227.14 | 4.213E-8 | 0 | 25843 | gtex_brain_ba24 |
| rs4984616 | 16 | 995342 | LMF1 | ENSG00000103227.14 | 4.206E-8 | 0 | 25657 | gtex_brain_ba24 |
| rs7201247 | 16 | 995434 | LMF1 | ENSG00000103227.14 | 3.016E-8 | 0 | 25565 | gtex_brain_ba24 |
| rs71142712 | 16 | 995565 | LMF1 | ENSG00000103227.14 | 3.523E-8 | 0 | 25434 | gtex_brain_ba24 |
| rs7187155 | 16 | 995718 | LMF1 | ENSG00000103227.14 | 7.76E-9 | 0 | 25281 | gtex_brain_ba24 |
| rs7202045 | 16 | 995834 | LMF1 | ENSG00000103227.14 | 7.746E-9 | 0 | 25165 | gtex_brain_ba24 |
| rs7192150 | 16 | 995894 | LMF1 | ENSG00000103227.14 | 4.196E-8 | 0 | 25105 | gtex_brain_ba24 |
| rs9328934 | 16 | 996150 | LMF1 | ENSG00000103227.14 | 7.711E-9 | 0 | 24849 | gtex_brain_ba24 |
| rs12929414 | 16 | 996948 | LMF1 | ENSG00000103227.14 | 1.081E-7 | 0 | 24051 | gtex_brain_ba24 |
| rs12923035 | 16 | 997183 | LMF1 | ENSG00000103227.14 | 4.172E-8 | 0 | 23816 | gtex_brain_ba24 |
| rs12446579 | 16 | 997352 | LMF1 | ENSG00000103227.14 | 3.986E-8 | 0 | 23647 | gtex_brain_ba24 |
| rs12447306 | 16 | 997473 | LMF1 | ENSG00000103227.14 | 3.637E-7 | 0 | 23526 | gtex_brain_ba24 |
| rs12445470 | 16 | 997496 | LMF1 | ENSG00000103227.14 | 2.164E-6 | 0 | 23503 | gtex_brain_ba24 |
| rs12447329 | 16 | 997520 | LMF1 | ENSG00000103227.14 | 2.254E-6 | 0 | 23479 | gtex_brain_ba24 |
| rs34656293 | 16 | 997682 | LMF1 | ENSG00000103227.14 | 1.171E-6 | 0 | 23317 | gtex_brain_ba24 |
| rs71382297 | 16 | 998197 | LMF1 | ENSG00000103227.14 | 1.583E-7 | 0 | 22802 | gtex_brain_ba24 |
| rs66532042 | 16 | 998245 | LMF1 | ENSG00000103227.14 | 4.128E-8 | 0 | 22754 | gtex_brain_ba24 |
| rs67224312 | 16 | 998369 | LMF1 | ENSG00000103227.14 | 4.138E-8 | 0 | 22630 | gtex_brain_ba24 |
| rs71382298 | 16 | 998420 | LMF1 | ENSG00000103227.14 | 5.99E-9 | 0 | 22579 | gtex_brain_ba24 |
| rs71382300 | 16 | 998660 | LMF1 | ENSG00000103227.14 | 6.583E-8 | 0 | 22339 | gtex_brain_ba24 |
| rs71382301 | 16 | 998694 | LMF1 | ENSG00000103227.14 | 8.398E-9 | 0 | 22305 | gtex_brain_ba24 |
| rs71382302 | 16 | 998728 | LMF1 | ENSG00000103227.14 | 1.209E-8 | 0 | 22271 | gtex_brain_ba24 |
| rs71384604 | 16 | 999262 | LMF1 | ENSG00000103227.14 | 5.174E-9 | 0 | 21737 | gtex_brain_ba24 |
| rs71384605 | 16 | 999272 | LMF1 | ENSG00000103227.14 | 5.173E-9 | 0 | 21727 | gtex_brain_ba24 |
| rs73483874 | 16 | 1000794 | LMF1 | ENSG00000103227.14 | 2.171E-7 | 0 | 20205 | gtex_brain_ba24 |
| rs75240805 | 16 | 1000839 | LMF1 | ENSG00000103227.14 | 2.702E-8 | 0 | 20160 | gtex_brain_ba24 |
| rs66485909 | 16 | 1000959 | LMF1 | ENSG00000103227.14 | 2.037E-8 | 0 | 20040 | gtex_brain_ba24 |
| rs3893734 | 16 | 1001021 | LMF1 | ENSG00000103227.14 | 2.282E-7 | 0 | 19978 | gtex_brain_ba24 |
| rs3852753 | 16 | 1001359 | LMF1 | ENSG00000103227.14 | 1.846E-7 | 0 | 19640 | gtex_brain_ba24 |
| rs3852754 | 16 | 1001414 | LMF1 | ENSG00000103227.14 | 1.982E-8 | 0 | 19585 | gtex_brain_ba24 |
| rs3852755 | 16 | 1001713 | LMF1 | ENSG00000103227.14 | 1.987E-8 | 0 | 19286 | gtex_brain_ba24 |
| rs3852756 | 16 | 1001801 | LMF1 | ENSG00000103227.14 | 1.987E-8 | 0 | 19198 | gtex_brain_ba24 |
| rs3865201 | 16 | 1001821 | LMF1 | ENSG00000103227.14 | 1.988E-8 | 0 | 19178 | gtex_brain_ba24 |
| rs3865202 | 16 | 1001930 | LMF1 | ENSG00000103227.14 | 1.989E-8 | 0 | 19069 | gtex_brain_ba24 |
| rs3844421 | 16 | 1001944 | LMF1 | ENSG00000103227.14 | 1.988E-8 | 0 | 19055 | gtex_brain_ba24 |
| rs3852757 | 16 | 1001966 | LMF1 | ENSG00000103227.14 | 1.989E-8 | 0 | 19033 | gtex_brain_ba24 |
| rs3852758 | 16 | 1001999 | LMF1 | ENSG00000103227.14 | 4.583E-8 | 0 | 19000 | gtex_brain_ba24 |
| rs3865203 | 16 | 1002064 | LMF1 | ENSG00000103227.14 | 2.55E-8 | 0 | 18935 | gtex_brain_ba24 |
| rs3852759 | 16 | 1002103 | LMF1 | ENSG00000103227.14 | 1.99E-8 | 0 | 18896 | gtex_brain_ba24 |
| rs3852760 | 16 | 1002178 | LMF1 | ENSG00000103227.14 | 1.985E-8 | 0 | 18821 | gtex_brain_ba24 |
| rs4470148 | 16 | 1002328 | LMF1 | ENSG00000103227.14 | 1.955E-8 | 0 | 18671 | gtex_brain_ba24 |
| rs9939249 | 16 | 1002365 | LMF1 | ENSG00000103227.14 | 1.553E-8 | 0 | 18634 | gtex_brain_ba24 |
| rs9939259 | 16 | 1002395 | LMF1 | ENSG00000103227.14 | 2.274E-9 | 0 | 18604 | gtex_brain_ba24 |
| rs9939418 | 16 | 1002526 | LMF1 | ENSG00000103227.14 | 1.334E-9 | 0 | 18473 | gtex_brain_ba24 |
| rs9933730 | 16 | 1002648 | LMF1 | ENSG00000103227.14 | 4.666E-8 | 0 | 18351 | gtex_brain_ba24 |
| rs9939520 | 16 | 1002658 | LMF1 | ENSG00000103227.14 | 1.989E-8 | 0 | 18341 | gtex_brain_ba24 |
| rs9931177 | 16 | 1002674 | LMF1 | ENSG00000103227.14 | 1.989E-8 | 0 | 18325 | gtex_brain_ba24 |
| rs9933807 | 16 | 1002732 | LMF1 | ENSG00000103227.14 | 1.989E-8 | 0 | 18267 | gtex_brain_ba24 |
| rs3751666 | 16 | 1004694 | LMF1 | ENSG00000103227.14 | 3.071E-9 | 0 | 16305 | gtex_brain_ba24 |
| rs3751665 | 16 | 1004743 | LMF1 | ENSG00000103227.14 | 3.071E-9 | 0 | 16256 | gtex_brain_ba24 |
| rs3829491 | 16 | 1004834 | LMF1 | ENSG00000103227.14 | 2.806E-9 | 0 | 16165 | gtex_brain_ba24 |
| rs67918525 | 16 | 1005836 | LMF1 | ENSG00000103227.14 | 2.879E-9 | 0 | 15163 | gtex_brain_ba24 |
| rs71384620 | 16 | 1005939 | LMF1 | ENSG00000103227.14 | 7.739E-7 | 0 | 15060 | gtex_brain_ba24 |
| rs66814413 | 16 | 1006294 | LMF1 | ENSG00000103227.14 | 3.071E-9 | 0 | 14705 | gtex_brain_ba24 |
| rs8062800 | 16 | 1006371 | LMF1 | ENSG00000103227.14 | 3.071E-9 | 0 | 14628 | gtex_brain_ba24 |
| rs4984617 | 16 | 1007268 | LMF1 | ENSG00000103227.14 | 3.071E-9 | 0 | 13731 | gtex_brain_ba24 |
| rs4984618 | 16 | 1007304 | LMF1 | ENSG00000103227.14 | 3.071E-9 | 0 | 13695 | gtex_brain_ba24 |
| rs4984619 | 16 | 1007366 | LMF1 | ENSG00000103227.14 | 3.071E-9 | 0 | 13633 | gtex_brain_ba24 |
| rs4984620 | 16 | 1007387 | LMF1 | ENSG00000103227.14 | 3.071E-9 | 0 | 13612 | gtex_brain_ba24 |
| rs4984621 | 16 | 1007461 | LMF1 | ENSG00000103227.14 | 3.071E-9 | 0 | 13538 | gtex_brain_ba24 |
| rs2729577 | 16 | 1009035 | LMF1 | ENSG00000103227.14 | 3.044E-9 | 0 | 11964 | gtex_brain_ba24 |
| rs11248957 | 16 | 1009667 | LMF1 | ENSG00000103227.14 | 3.082E-9 | 0 | 11332 | gtex_brain_ba24 |
| rs11861267 | 16 | 1010344 | LMF1 | ENSG00000103227.14 | 4.014E-8 | 0 | 10655 | gtex_brain_ba24 |
| rs7404696 | 16 | 1012393 | LMF1 | ENSG00000103227.14 | 9.845E-8 | 0 | 8606 | gtex_brain_ba24 |
| rs34477053 | 16 | 1012458 | LMF1 | ENSG00000103227.14 | 2.177E-6 | 0 | 8541 | gtex_brain_ba24 |
| rs59113884 | 16 | 1012463 | LMF1 | ENSG00000103227.14 | 2.177E-6 | 0 | 8536 | gtex_brain_ba24 |
| rs12928779 | 16 | 1013537 | LMF1 | ENSG00000103227.14 | 3.071E-9 | 0 | 7462 | gtex_brain_ba24 |
| rs60613700 | 16 | 1016607 | LMF1 | ENSG00000103227.14 | 4.008E-8 | 0 | 4392 | gtex_brain_ba24 |
| rs2432296 | 16 | 1021266 | LMF1 | ENSG00000103227.14 | 3.07E-7 | 0 | -267 | gtex_brain_ba24 |
| rs2858991 | 16 | 1024913 | LMF1 | ENSG00000103227.14 | 4.039E-7 | 0 | -3914 | gtex_brain_ba24 |
| rs11248958 | 16 | 1028545 | LMF1 | ENSG00000103227.14 | 7.558E-7 | 0 | -7546 | gtex_brain_ba24 |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| CHEMNITZ RESPONSE TO PROSTAGLANDIN E2 DN | 391 | 222 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN APOPTOSIS BY DOXORUBICIN DN | 1781 | 1082 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN RESPONSE TO MC AND DOXORUBICIN DN | 770 | 415 | All SZGR 2.0 genes in this pathway |
| GAUSSMANN MLL AF4 FUSION TARGETS A DN | 90 | 61 | All SZGR 2.0 genes in this pathway |
| NIKOLSKY BREAST CANCER 16P13 AMPLICON | 120 | 49 | All SZGR 2.0 genes in this pathway |
| HADDAD B LYMPHOCYTE PROGENITOR | 293 | 193 | All SZGR 2.0 genes in this pathway |
| IVANOVA HEMATOPOIESIS EARLY PROGENITOR | 532 | 309 | All SZGR 2.0 genes in this pathway |
| SATO SILENCED BY METHYLATION IN PANCREATIC CANCER 1 | 419 | 273 | All SZGR 2.0 genes in this pathway |
| SMID BREAST CANCER BASAL DN | 701 | 446 | All SZGR 2.0 genes in this pathway |
| WEST ADRENOCORTICAL TUMOR DN | 546 | 362 | All SZGR 2.0 genes in this pathway |