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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: RNF40

Summary

GeneID

9810

Symbol

RNF40

Synonyms

Description

ring finger protein 40

Locus tag

Gene type

protein-coding

Map location

16p11.2-p11.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIE

genome scan meta-analysis (European-ancestry samples)

Psr: 0.01775

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

GO:0016874

ligase activity

IEA

GO:0008270

zinc ion binding

IEA

GO:0046872

metal ion binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0006511

ubiquitin-dependent protein catabolic process

IEA

GO:0016568

chromatin modification

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005634

nucleus

IEA

GO:0005694

chromosome

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
NCBP1	CBP80 \| MGC2087 \| NCBP	nuclear cap binding protein subunit 1, 80kDa	Two-hybrid	BioGRID	16189514
SPRYD5	MGC10977 \| TRIM51	SPRY domain containing 5	Two-hybrid	BioGRID	16189514
STX1A	HPC-1 \| STX1 \| p35-1	syntaxin 1A (brain)	Affinity Capture-Western Reconstituted Complex	BioGRID	12121982
UBE2L6	MGC40331 \| RIG-B \| UBCH8	ubiquitin-conjugating enzyme E2L 6	-	HPRD,BioGRID	12121982
ZNF451	COASTER \| FLJ23421 \| FLJ53246 \| FLJ90693 \| KIAA0576 \| KIAA1702 \| MGC26701 \| dJ417I1.1	zinc finger protein 451	Two-hybrid	BioGRID	16189514

Pathway annotation

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-1/206	863	869	1A	hsa-miR-1	UGGAAUGUAAAGAAGUAUGUA
				hsa-miR-206^SZ	UGGAAUGUAAGGAAGUGUGUGG
				hsa-miR-613	AGGAAUGUUCCUUCUUUGCC
miR-125/351	9	15	m8	hsa-miR-125b^brain	UCCCUGAGACCCUAACUUGUGA
miR-125/351	9	15	m8	hsa-miR-125a^brain	UCCCUGAGACCCUUUAACCUGUG
miR-331	11	17	1A	hsa-miR-331^brain	GCCCCUGGGCCUAUCCUAGAA
miR-491	60	66	m8	hsa-miR-491^brain	AGUGGGGAACCCUUCCAUGAGGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.