Gene Page: LINC01470
Summary ?
| GeneID | 101927134 |
| Symbol | LINC01470 |
| Synonyms | - |
| Description | long intergenic non-protein coding RNA 1470 |
| Reference | HGNC:HGNC:51105|Ensembl:ENSG00000249484| |
| Gene type | ncRNA |
| Map location | 5q33.1 |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:GWAScat | Genome-wide Association Studies | This data set includes 560 SNPs associated with schizophrenia. A total of 486 genes were mapped to these SNPs within 50kb. | |
| CV:GWASdb | Genome-wide Association Studies | GWASdb records for schizophrenia | |
| CV:PGC128 | Genome-wide Association Study | A multi-stage schizophrenia GWAS of up to 36,989 cases and 113,075 controls. Reported by the Schizophrenia Working Group of PGC. 128 independent associations spanning 108 loci | |
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| LK:YES | Genome-wide Association Study | This data set included 99 genes mapped to the 22 regions. The 24 leading SNPs were also included in CV:Ripke_2013 |
Section I. Genetics and epigenetics annotation
CV:PGC128
| SNP ID | Chromosome | Position | Allele | P | Function | Gene | Up/Down Distance |
|---|---|---|---|---|---|---|---|
| rs111294930 | chr5 | 152177121 | AG | 1.312E-9 | ncRNA_intronic | LINC01470 | |
| rs2973155 | chr5 | 152608619 | TC | 1.016E-9 | intergenic | LINC01470,GRIA1 | dist=256710;dist=261465 |
| rs79212538 | chr5 | 151993104 | TG | 3.843E-8 | intergenic | NMUR2,LINC01470 | dist=208264;dist=5421 |
| rs12522290 | chr5 | 152797656 | CG | 2.227E-8 | intergenic | LINC01470,GRIA1 | dist=445747;dist=72428 |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.