Gene Page: SLC35F4
Summary ?
| GeneID | 341880 |
| Symbol | SLC35F4 |
| Synonyms | C14orf36|c14_5373 |
| Description | solute carrier family 35 member F4 |
| Reference | HGNC:HGNC:19845|Ensembl:ENSG00000151812|Vega:OTTHUMG00000171317 |
| Gene type | protein-coding |
| Map location | 14q22.2 |
| Pascal p-value | 0.271 |
| Fetal beta | 0.273 |
| eGene | Cerebellum Myers' cis & trans Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:GWAScat | Genome-wide Association Studies | This data set includes 560 SNPs associated with schizophrenia. A total of 486 genes were mapped to these SNPs within 50kb. | |
| CV:GWASdb | Genome-wide Association Studies | GWASdb records for schizophrenia | |
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs17572651 | chr1 | 218943612 | SLC35F4 | 341880 | 0.05 | trans | ||
| rs16829545 | chr2 | 151977407 | SLC35F4 | 341880 | 1.455E-19 | trans | ||
| rs7584986 | chr2 | 184111432 | SLC35F4 | 341880 | 1.276E-7 | trans | ||
| rs6741060 | chr2 | 217169088 | SLC35F4 | 341880 | 0.01 | trans | ||
| rs17762315 | chr5 | 76807576 | SLC35F4 | 341880 | 0.02 | trans | ||
| rs10491487 | chr5 | 80323367 | SLC35F4 | 341880 | 0.03 | trans | ||
| rs11139334 | chr9 | 84209393 | SLC35F4 | 341880 | 0.04 | trans | ||
| rs11061703 | chr12 | 1436977 | SLC35F4 | 341880 | 0.07 | trans | ||
| rs16955618 | chr15 | 29937543 | SLC35F4 | 341880 | 9.108E-20 | trans | ||
| rs6046679 | chr20 | 20146874 | SLC35F4 | 341880 | 0.18 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| MIKKELSEN MEF HCP WITH H3 UNMETHYLATED | 228 | 119 | All SZGR 2.0 genes in this pathway |
| BRUINS UVC RESPONSE VIA TP53 GROUP A | 898 | 516 | All SZGR 2.0 genes in this pathway |