DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
DSGSGS
Uniprot ID:
Q5VSY0
Source protein:
G kinase-anchoring protein 1
Source gene:
GKAP1
Class:
DEG_SCF_TRCP1_1
Location:
22:27
E3 ligase:
BTRC
DEGRON score:
0.9941
ASA_SCORE:
67.6
COIL:
0.9082
CONS_SCORE:
0.5166
DSS_SCORE:
0.5875
HELIX:
0.0287
FCONS_SCORE:
0.9963
RIG_SCORE:
0.5756
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G36C
TCGA-AJ-A3EL
UCEC
TCGA
DSGSGS
DEG_SCF_TRCP1_1
0.0833
p.G36C
DO41542
UCEC
ICGC
DSGSGS
DEG_SCF_TRCP1_1
0.0833
p.K35N
TCGA-DF-A2KU
UCEC
TCGA
DSGSGS
DEG_SCF_TRCP1_1
0.2222
p.K35N
DO223286
UCEC
ICGC
DSGSGS
DEG_SCF_TRCP1_1
0.2222
p.A13T
DO230347
COCA
ICGC
DSGSGS
DEG_SCF_TRCP1_1
0.0833
p.R37Q
SIDM00149
Melanoma
GDSC
DSGSGS
DEG_SCF_TRCP1_1
0.0556
p.R37Q
ACH-000750
Skin Cancer
CCLE
DSGSGS
DEG_SCF_TRCP1_1
0.0556
p.R37Q
LOXIMVI
skin
COSMIC
DSGSGS
DEG_SCF_TRCP1_1
0.0556
Drug responses associated with GKAP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DSGSGS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q5VSY0
G kinase-anchoring protein 1
DEG_SCF_TRCP1_1
22:27
DSGSGS
BTRC
0.9941
More...
Q9UPN3
Microtubule-actin cross-linking factor 1, isoforms 1/2/3/4/5
DEG_SCF_TRCP1_1
6405:6410
DSGSGS
BTRC
0.7925
More...
Q9Y3Q8
TSC22 domain family protein 4
DEG_SCF_TRCP1_1
309:314
DSGSGS
BTRC
0.9299
More...