DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
DSGSSSS
Uniprot ID:
Q8IYB3
Source protein:
Serine/arginine repetitive matrix protein 1
Source gene:
SRRM1
Class:
DEG_SCF_TRCP1_1
Location:
495:501
E3 ligase:
BTRC
DEGRON score:
0.9422
ASA_SCORE:
90.9
COIL:
0.9573
CONS_SCORE:
0.3771
DSS_SCORE:
0.8218
HELIX:
0.033
FCONS_SCORE:
0.9687
RIG_SCORE:
0.4137
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D504N
TCGA-43-A56V
LUSC
TCGA
DSGSSSS
DEG_SCF_TRCP1_1
0.25
p.P507L
TCGA-DI-A1BU
UCEC
TCGA
DSGSSSS
DEG_SCF_TRCP1_1
0.1667
p.S501P
TCGA-EE-A2GB
SKCM
TCGA
DSGSSSS
DEG_SCF_TRCP1_1
0.5641
p.S501P
DO222683
MELA
ICGC
DSGSSSS
DEG_SCF_TRCP1_1
0.5641
p.S501P
DO37417
SKCM
ICGC
DSGSSSS
DEG_SCF_TRCP1_1
0.5641
p.Q491P
TCGA-FI-A2D5
UCEC
TCGA
DSGSSSS
DEG_SCF_TRCP1_1
0.2222
p.Q491P
DO41331
UCEC
ICGC
DSGSSSS
DEG_SCF_TRCP1_1
0.2222
p.D495Y
TCGA-GN-A264
SKCM
TCGA
DSGSSSS
DEG_SCF_TRCP1_1
0.7325
p.H511Y
TCGA-W3-AA1V
SKCM
TCGA
DSGSSSS
DEG_SCF_TRCP1_1
0.0556
p.D499N
DO45535
LUSC
ICGC
DSGSSSS
DEG_SCF_TRCP1_1
0.6932
p.H506Y
DO51276
SKCM
ICGC
DSGSSSS
DEG_SCF_TRCP1_1
0.1944
p.P502L
DO42023
UCEC
ICGC
DSGSSSS
DEG_SCF_TRCP1_1
0.3056
p.R509G
SIDM00286
Neuroblastoma
GDSC
DSGSSSS
DEG_SCF_TRCP1_1
0.1111
p.R509G
ACH-000136
Neuroblastoma
CCLE
DSGSSSS
DEG_SCF_TRCP1_1
0.1111
p.R509G
CHP-126
autonomic_ganglia
COSMIC
DSGSSSS
DEG_SCF_TRCP1_1
0.1111
p.K508E
ACH-001411
Bladder Cancer
CCLE
DSGSSSS
DEG_SCF_TRCP1_1
0.25
p.R504G
CHP-126
autonomic_ganglia
COSMIC
DSGSSSS
DEG_SCF_TRCP1_1
0.25
p.R508G
CHP-126
autonomic_ganglia
COSMIC
DSGSSSS
DEG_SCF_TRCP1_1
0.25
Drug responses associated with SRRM1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DSGSSSS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IYB3
Serine/arginine repetitive matrix protein 1
DEG_SCF_TRCP1_1
495:501
DSGSSSS
BTRC
0.9422
More...
Q8IYD1
Eukaryotic peptide chain release factor GTP-binding subunit ERF3B
DEG_SCF_TRCP1_1
2:8
DSGSSSS
BTRC
0.8884
More...
Q8NFP9
Neurobeachin
DEG_SCF_TRCP1_1
1844:1850
DSGSSSS
BTRC
0.9964
More...