DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
DSGVGRT
Uniprot ID:
Q76G19
Source protein:
PDZ domain-containing protein 4
Source gene:
PDZD4
Class:
DEG_SCF_TRCP1_1
Location:
277:283
E3 ligase:
BTRC
DEGRON score:
0.9927
ASA_SCORE:
71.2714
COIL:
0.8011
CONS_SCORE:
0.5465
DSS_SCORE:
0.824
HELIX:
0.059
FCONS_SCORE:
1.2075
RIG_SCORE:
0.5754
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R282Q
TCGA-5M-AAT6
COAD
TCGA
DSGVGRT
DEG_SCF_TRCP1_1
0.6218
p.R282Q
DO223703
COAD
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.6218
p.D284E
TCGA-66-2786
LUSC
TCGA
DSGVGRT
DEG_SCF_TRCP1_1
0.3056
p.D284E
DO26419
LUSC
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.3056
p.E290K
TCGA-AA-3984
COAD
TCGA
DSGVGRT
DEG_SCF_TRCP1_1
0.1389
p.E290K
TCGA-AA-A00N
COAD
TCGA
DSGVGRT
DEG_SCF_TRCP1_1
0.1389
p.E290K
TCGA-BS-A0UF
UCEC
TCGA
DSGVGRT
DEG_SCF_TRCP1_1
0.1389
p.E290K
TCGA-EE-A3AF
SKCM
TCGA
DSGVGRT
DEG_SCF_TRCP1_1
0.1389
p.E290K
DO9002
COAD
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.1389
p.E290K
DO9876
COAD
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.1389
p.E290K
DO228017
SKCA
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.1389
p.E290K
DO37911
SKCM
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.1389
p.E290K
DO41488
UCEC
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.1389
p.D284N
DO223058
ESCA
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.3056
p.S292R
DO228952
LICA
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.0833
p.D277E
DO228985
LICA
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.6758
p.S273R
DO229018
LICA
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.2222
p.L270M
DO229028
LICA
ICGC
DSGVGRT
DEG_SCF_TRCP1_1
0.1389
p.G285R
SIDM00121
T-Lymphoblastic Leukemia
GDSC
DSGVGRT
DEG_SCF_TRCP1_1
0.2778
p.G285R
CCRF-CEM
haematopoietic_and_lymphoid_tissue
COSMIC
DSGVGRT
DEG_SCF_TRCP1_1
0.2778
p.R282L
ACH-000737
Lung Cancer
CCLE
DSGVGRT
DEG_SCF_TRCP1_1
0.7316
p.G279R
ACH-001738
Leukemia
CCLE
DSGVGRT
DEG_SCF_TRCP1_1
0.7568
p.G279R
CCRF-CEM
haematopoietic_and_lymphoid_tissue
COSMIC
DSGVGRT
DEG_SCF_TRCP1_1
0.7568
p.D277G
ACH-001991
Primary
CCLE
DSGVGRT
DEG_SCF_TRCP1_1
0.7198
p.R270L
NCI-H2009
lung
COSMIC
DSGVGRT
DEG_SCF_TRCP1_1
0.1389
Drug responses associated with PDZD4 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of DSGVGRT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UPQ7
E3 ubiquitin-protein ligase PDZRN3
DEG_SCF_TRCP1_1
568:574
DSGVGRT
BTRC
0.993
More...
Q6ZMN7
PDZ domain-containing RING finger protein 4
DEG_SCF_TRCP1_1
552:558
DSGVGRT
BTRC
0.9956
More...
Q76G19
PDZ domain-containing protein 4
DEG_SCF_TRCP1_1
277:283
DSGVGRT
BTRC
0.9927
More...