DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
GKENF
Uniprot ID:
A6H8Y1
Source protein:
Transcription factor TFIIIB component B'' homolog
Source gene:
BDP1
Class:
DEG_APCC_KENBOX_2
Location:
1286:1290
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7173
ASA_SCORE:
95.94
COIL:
0.7158
CONS_SCORE:
0.3482
DSS_SCORE:
0.5373
HELIX:
0.219
FCONS_SCORE:
1.0428
RIG_SCORE:
0.7239
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.N1289S
TCGA-AA-3519
COAD
TCGA
GKENF
DEG_APCC_KENBOX_2
0.7069
p.N1289S
DO7914
COAD
ICGC
GKENF
DEG_APCC_KENBOX_2
0.7069
p.E1288K
TCGA-AX-A05Z
UCEC
TCGA
GKENF
DEG_APCC_KENBOX_2
0.7022
p.E1288K
DO40884
UCEC
ICGC
GKENF
DEG_APCC_KENBOX_2
0.7022
p.E1296K
TCGA-DK-AA76
BLCA
TCGA
GKENF
DEG_APCC_KENBOX_2
0.1667
p.E1296K
DO219013
BLCA
ICGC
GKENF
DEG_APCC_KENBOX_2
0.1667
p.E1277Q
SIDM02040
Esophageal Carcinoma
GDSC
GKENF
DEG_APCC_KENBOX_2
0.0833
Drug responses associated with BDP1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GKENF
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6H8Y1
Transcription factor TFIIIB component B'' homolog
DEG_APCC_KENBOX_2
1286:1290
GKENF
APC,CDC20,FZR1
0.7173
More...
P16519
Neuroendocrine convertase 2
DEG_APCC_KENBOX_2
496:500
GKENF
APC,CDC20,FZR1
0.5817
More...
Q13557
Calcium/calmodulin-dependent protein kinase type II subunit delta
DEG_APCC_KENBOX_2
485:489
GKENF
APC,CDC20,FZR1
0.9658
More...