DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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Degron:
GKENF
Uniprot ID:
Q13557
Source protein:
Calcium/calmodulin-dependent protein kinase type II subunit delta
Source gene:
CAMK2D
Class:
DEG_APCC_KENBOX_2
Location:
485:489
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9658
ASA_SCORE:
87.56
COIL:
0.8004
CONS_SCORE:
0.1584
DSS_SCORE:
0.522
HELIX:
0.0548
FCONS_SCORE:
0.882
RIG_SCORE:
0.6779
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I499T
TCGA-AX-A05Z
UCEC
TCGA
GKENF
DEG_APCC_KENBOX_2
0.0556
p.P480S
TCGA-ER-A193
SKCM
TCGA
GKENF
DEG_APCC_KENBOX_2
0.1944
p.W489C
DO10443
COAD
ICGC
GKENF
DEG_APCC_KENBOX_2
0.7
p.R492Q
DO222741
COCA
ICGC
GKENF
DEG_APCC_KENBOX_2
0.25
p.H490Q
DO229034
LICA
ICGC
GKENF
DEG_APCC_KENBOX_2
0.75
p.D493N
DO27580
LUSC
ICGC
GKENF
DEG_APCC_KENBOX_2
0.2222
p.M477I
DO32347
OV
ICGC
GKENF
DEG_APCC_KENBOX_2
0.1111
p.R487C
DO223286
UCEC
ICGC
GKENF
DEG_APCC_KENBOX_2
0.8301
p.G482W
SN12C
kidney
COSMIC
GKENF
DEG_APCC_KENBOX_2
0.25
p.G485W
SN12C
kidney
COSMIC
GKENF
DEG_APCC_KENBOX_2
0.6714
Drug responses associated with CAMK2D mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GKENF
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6H8Y1
Transcription factor TFIIIB component B'' homolog
DEG_APCC_KENBOX_2
1286:1290
GKENF
APC,CDC20,FZR1
0.7173
More...
P16519
Neuroendocrine convertase 2
DEG_APCC_KENBOX_2
496:500
GKENF
APC,CDC20,FZR1
0.5817
More...
Q13557
Calcium/calmodulin-dependent protein kinase type II subunit delta
DEG_APCC_KENBOX_2
485:489
GKENF
APC,CDC20,FZR1
0.9658
More...