DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
GKENF
Uniprot ID:
P16519
Source protein:
Neuroendocrine convertase 2
Source gene:
PCSK2
Class:
DEG_APCC_KENBOX_2
Location:
496:500
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5817
ASA_SCORE:
87.48
COIL:
0.7858
CONS_SCORE:
0.2962
DSS_SCORE:
0.1883
HELIX:
0.0264
FCONS_SCORE:
0.77
RIG_SCORE:
0.8313
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R502C
TCGA-A6-6654
COAD
TCGA
GKENF
DEG_APCC_KENBOX_2
0.2778
p.R502C
TCGA-BR-4256
STAD
TCGA
GKENF
DEG_APCC_KENBOX_2
0.2778
p.R502C
DO9498
COAD
ICGC
GKENF
DEG_APCC_KENBOX_2
0.2778
p.R502C
DO38743
STAD
ICGC
GKENF
DEG_APCC_KENBOX_2
0.2778
p.F500S
TCGA-BS-A0UF
UCEC
TCGA
GKENF
DEG_APCC_KENBOX_2
0.6871
p.F500S
DO41488
UCEC
ICGC
GKENF
DEG_APCC_KENBOX_2
0.6871
p.E495A
TCGA-D8-A1XK
BRCA
TCGA
GKENF
DEG_APCC_KENBOX_2
0.3056
p.E495A
DO4749
BRCA
ICGC
GKENF
DEG_APCC_KENBOX_2
0.3056
p.G496R
TCGA-FW-A3R5
SKCM
TCGA
GKENF
DEG_APCC_KENBOX_2
0.6457
p.G496R
DO37406
SKCM
ICGC
GKENF
DEG_APCC_KENBOX_2
0.6457
p.A509V
TCGA-WW-A8ZI
PRAD
TCGA
GKENF
DEG_APCC_KENBOX_2
0.0833
p.A509V
DO49865
PRAD
ICGC
GKENF
DEG_APCC_KENBOX_2
0.0833
p.V486A
DO18392
KIRC
ICGC
GKENF
DEG_APCC_KENBOX_2
0.0556
p.R502L
DO229025
LICA
ICGC
GKENF
DEG_APCC_KENBOX_2
0.2778
p.G496E
SIDM00258
Neuroblastoma
GDSC
GKENF
DEG_APCC_KENBOX_2
0.6087
p.G496E
NB12
autonomic_ganglia
COSMIC
GKENF
DEG_APCC_KENBOX_2
0.6087
p.M506I
NCI-H211
lung
COSMIC
GKENF
DEG_APCC_KENBOX_2
0.1667
p.M490I
NCI-H211
lung
COSMIC
GKENF
DEG_APCC_KENBOX_2
0.1667
Drug responses associated with PCSK2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GKENF
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
A6H8Y1
Transcription factor TFIIIB component B'' homolog
DEG_APCC_KENBOX_2
1286:1290
GKENF
APC,CDC20,FZR1
0.7173
More...
P16519
Neuroendocrine convertase 2
DEG_APCC_KENBOX_2
496:500
GKENF
APC,CDC20,FZR1
0.5817
More...
Q13557
Calcium/calmodulin-dependent protein kinase type II subunit delta
DEG_APCC_KENBOX_2
485:489
GKENF
APC,CDC20,FZR1
0.9658
More...