DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
GKENG
Uniprot ID:
Q9H9J4
Source protein:
Ubiquitin carboxyl-terminal hydrolase 42
Source gene:
USP42
Class:
DEG_APCC_KENBOX_2
Location:
623:627
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7408
ASA_SCORE:
91.74
COIL:
0.8292
CONS_SCORE:
0.2507
DSS_SCORE:
0.6719
HELIX:
0.1386
FCONS_SCORE:
0.8735
RIG_SCORE:
0.5984
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E617K
TCGA-66-2795
LUSC
TCGA
GKENG
DEG_APCC_KENBOX_2
0.1667
p.E617K
DO26710
LUSC
ICGC
GKENG
DEG_APCC_KENBOX_2
0.1667
p.E617K
SIDM00014
Colorectal Carcinoma
GDSC
GKENG
DEG_APCC_KENBOX_2
0.1667
p.E617K
LIM1215
large_intestine
COSMIC
GKENG
DEG_APCC_KENBOX_2
0.1667
p.G629D
TCGA-AX-A1CE
UCEC
TCGA
GKENG
DEG_APCC_KENBOX_2
0.2778
p.G629D
DO42280
UCEC
ICGC
GKENG
DEG_APCC_KENBOX_2
0.2778
p.I628N
TCGA-G4-6588
COAD
TCGA
GKENG
DEG_APCC_KENBOX_2
0.3056
p.I628N
DO10140
COAD
ICGC
GKENG
DEG_APCC_KENBOX_2
0.3056
p.I631T
DO233154
GACA
ICGC
GKENG
DEG_APCC_KENBOX_2
0.2222
p.V632L
DO229025
LICA
ICGC
GKENG
DEG_APCC_KENBOX_2
0.1944
p.G621V
DO232224
PBCA
ICGC
GKENG
DEG_APCC_KENBOX_2
0.2778
p.H635L
SIDM00740
Squamous Cell Lung Carcinoma
GDSC
GKENG
DEG_APCC_KENBOX_2
0.1111
p.H635L
ACH-000747
Lung Cancer
CCLE
GKENG
DEG_APCC_KENBOX_2
0.1111
p.H635L
NCI-H1703
lung
COSMIC
GKENG
DEG_APCC_KENBOX_2
0.1111
Drug responses associated with USP42 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GKENG
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q03164
Histone-lysine N-methyltransferase 2A
DEG_APCC_KENBOX_2
2745:2749
GKENG
APC,CDC20,FZR1
0.9366
More...
Q9H9J4
Ubiquitin carboxyl-terminal hydrolase 42
DEG_APCC_KENBOX_2
623:627
GKENG
APC,CDC20,FZR1
0.7408
More...
A6NC57
Ankyrin repeat domain-containing protein 62
DEG_APCC_KENBOX_2
347:351
GKENG
APC,CDC20,FZR1
0.9971
More...