DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
GKENR
Uniprot ID:
Q13523
Source protein:
Serine/threonine-protein kinase PRP4 homolog
Source gene:
PRPF4B
Class:
DEG_APCC_KENBOX_2
Location:
336:340
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9861
ASA_SCORE:
112.46
COIL:
0.9208
CONS_SCORE:
0.4303
DSS_SCORE:
0.8682
HELIX:
0.043
FCONS_SCORE:
1.0063
RIG_SCORE:
0.4698
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.G336V
TCGA-91-6828
LUAD
TCGA
GKENR
DEG_APCC_KENBOX_2
0.6421
p.G336V
DO26150
LUAD
ICGC
GKENR
DEG_APCC_KENBOX_2
0.6421
p.P346H
TCGA-AP-A059
UCEC
TCGA
GKENR
DEG_APCC_KENBOX_2
0.1667
p.P350S
TCGA-D3-A8GI
SKCM
TCGA
GKENR
DEG_APCC_KENBOX_2
0.0556
p.G347V
DO228974
LICA
ICGC
GKENR
DEG_APCC_KENBOX_2
0.1389
p.S349I
DO229009
LICA
ICGC
GKENR
DEG_APCC_KENBOX_2
0.5278
p.P336S
DO220903
MELA
ICGC
GKENR
DEG_APCC_KENBOX_2
0.6752
p.P336S
DO50284
SKCM
ICGC
GKENR
DEG_APCC_KENBOX_2
0.6752
p.G347D
DO232224
PBCA
ICGC
GKENR
DEG_APCC_KENBOX_2
0.1389
p.P332H
DO41361
UCEC
ICGC
GKENR
DEG_APCC_KENBOX_2
0.2222
Drug responses associated with PRPF4B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of GKENR
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q13523
Serine/threonine-protein kinase PRP4 homolog
DEG_APCC_KENBOX_2
336:340
GKENR
APC,CDC20,FZR1
0.9861
More...
Q14157
Ubiquitin-associated protein 2-like
DEG_APCC_KENBOX_2
120:124
GKENR
APC,CDC20,FZR1
0.7271
More...
Q5JSZ5
Protein PRRC2B
DEG_APCC_KENBOX_2
326:330
GKENR
APC,CDC20,FZR1
0.9166
More...